Streptomyces drozdowiczii: NEH16_02535
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Entry
NEH16_02535 CDS
T09042
Name
(GenBank) zf-TFIIB domain-containing protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NEH16_02535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdrz03400
]
NEH16_02535
Enzymes [BR:
sdrz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NEH16_02535
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NEH16_02535
DNA repair and recombination proteins [BR:
sdrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NEH16_02535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Zn_ribbon_8
Prok-RING_1
TniQ
Motif
Other DBs
NCBI-ProteinID:
UZK53151
LinkDB
All DBs
Position
complement(554043..554903)
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVEALRLFLDDHLVGKEIDRVLPVAISVLKTYDPPLTALHGGTVTDVRRHGKFLD
IGVGPLHLVTHLARAGWLRWNDAFPAAPPRPGKGPLALRTVLTGGDGFDLTEAGTTKRLA
VHLVHDPAEVPGIARLGPDPLGPEFDRDAFAALLDGERRQIKGALRDQSLIGGIGNAYSD
EILHVAKMSPFKLTANLTDDEITRLHTAMRTTLEDAVARSGGVEAGRLKAEKKSAMRVHG
RTGQACPVCGDTIREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgccggaagtcgaagccctgcggctcttcctcgacgaccatctcgtcggc
aaggagatcgaccgcgtcctgcccgtcgccatcagcgtcctcaagacatacgacccaccg
ctcaccgccctgcacggcggcacggtcaccgacgtacggcggcacggcaagttcctcgac
atcggcgtcggccccctccacctcgtcacccacctcgcccgggccggctggctccgctgg
aacgacgcctttcccgctgccccgccgcgccccggcaagggcccgctggcgctgcgtacc
gtcctcaccggcggcgacggcttcgacctcaccgaagcgggcaccaccaaacgcctcgcc
gttcacctcgtgcacgacccggccgaggtccccgggatcgcccgcctcggacccgacccg
ctcggcccggaattcgaccgggacgcgttcgccgcgctcctcgacggggaacgccgccag
atcaagggcgccctgcgcgaccagtcgctcatcggcggcatcggcaacgcgtacagcgac
gagatcctgcacgtcgccaagatgtcgccgttcaagctcaccgcgaacctcaccgacgac
gagatcacccgcctccacacagccatgcgcaccaccctggaggacgccgtcgcccggtcc
ggcggcgtcgaggcggggcgcctcaaggccgagaagaagagcgcgatgcgggtccacggg
cgcaccggccaggcatgcccggtctgcggcgacacgatccgcgaggtctccttcagcgac
tcctcgctccagtactgcccgacctgccagaccggcggcaaaccgctcgcggaccgccgc
ctgtcccggctgctcaagtag
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