Streptomyces drozdowiczii: NEH16_09765
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Entry
NEH16_09765 CDS
T09042
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NEH16_09765 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdrz03400
]
NEH16_09765 (ligD)
Enzymes [BR:
sdrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NEH16_09765 (ligD)
DNA repair and recombination proteins [BR:
sdrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NEH16_09765 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UZK54393
LinkDB
All DBs
Position
2217481..2218371
Genome browser
AA seq
296 aa
AA seq
DB search
MTPITEVEGRRLSLSNLDKVLYPATGTTKGEVLHYYAATAAGVLLPHLRDRPVSFLRYPD
GPEGQLFFTKNPPPGTPSWVRRAPVPHRESEPSEQVVVEDLASLMWAANLVVEFHTPQWR
AETPAVADRLVFDLDPGAPATVVECCRVALWLRERLADDGLTAYGKTSGAKGLHLLVPIV
PTDSAAVSAYAKGLAVRAEKELADLVVHRMRKALRPGKVFVDFSQNAAAKTTATPYTLRA
RAEPAVSAPVTWAEIEGCRSPADLVFLADGMTARLDRHGDLLAPLCDPEAGRPLPA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcaccgaggtggaggggcgacggctgtccctgagcaatctggacaaggtg
ctgtatccggccaccggcaccaccaagggcgaggtgctgcactattacgcggccacggcg
gccggggtgctgctcccgcatctgcgggaccggccggtgtccttcctgcgctatccggac
ggtccggagggccagctgttcttcaccaagaacccgccgcccggtactccgtcctgggta
cgccgggccccggtgccgcaccgcgagagcgagccgtccgaacaggtggtcgtggaggat
ctggcctcgctgatgtgggccgccaacctcgtcgtggagttccacaccccgcagtggcgg
gcggagacccccgcggtggccgaccggctggtcttcgacctggacccgggggcgcccgcc
acggtcgtcgagtgctgccgggtcgcgctgtggctgcgggagcggctggccgacgacggc
ctcacggcgtacgggaagacctcgggcgccaagggcctgcatctgctggtcccgatcgtc
ccgacggactcggcggcggtgtcggcgtacgcgaagggcctcgccgtccgtgcggagaag
gagctggcggacctggtggtgcaccggatgcggaaggcgctgcggccgggcaaggtcttc
gtcgacttcagccagaacgccgccgcgaagaccaccgccacgccctacaccctgcgcgcc
cgcgccgagccggccgtctcggcgccggtcacctgggcggagatcgagggctgccgctcc
cccgccgatctggtcttcctggcggacggcatgacggcacggctcgaccggcacggcgat
ctgctggccccgctgtgcgacccggaagcgggacggccgcttccggcctga
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