Streptomyces drozdowiczii: NEH16_15035
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Entry
NEH16_15035 CDS
T09042
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdrz
Streptomyces drozdowiczii
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdrz03019
]
NEH16_15035 (hrpA)
Enzymes [BR:
sdrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NEH16_15035 (hrpA)
Messenger RNA biogenesis [BR:
sdrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NEH16_15035 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
PhoH
NACHT
DUF6139
AAA_16
SLFN-g3_helicase
ResIII
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UZK55267
UniProt:
A0ABY6PSL2
LinkDB
All DBs
Position
3322273..3326193
Genome browser
AA seq
1306 aa
AA seq
DB search
MSTSFADLQSRLAQLSLRDANRLGRRLEGARRIRKPEAQRAVLDEIAAQADKSAGRLEQR
AGRMPALSYPEQLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGLRGM
IGHTQPRRIAARTVAERIADELKTPLGETVGWKVRFTDQVNPDATFVKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVVTSATIDPERFSRHFGD
APIIEVSGRTYPVEVRYRPLLEEDGDDADRDQITAICDAVDELQGEGPGDVLVFLSGERE
IRDTADALGKRNLRNTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEDDFLTRPE
FTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPAEKDP
KKRLTPLGRKLSQLPVDPRLARMVVEADRNGCVREVMVIAAALSIQDPRERPSDKQTQAD
QQHARFKDETSDFLAFLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
SVAKQMGIELNEEDAPEQSVHTSLLAGLLSHIGLKDTEKNEYLGARSAKFAIFPGSALFK
KQPRFVMSAELVETSRLWARVNAKVEPEWIEPLAQHLLKRTYSEPHWEKDQAAVMAYERV
TLYGVPIVAQRKINFGRIDQETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEELEHR
ARRRDILVDDETLFDFYDQRIPEHIVSGAHFDSWWKHKRRDEPDALDFERSMLINEKAGA
VTKDDYPDSWRQGKLKFRVTYQFEPGADADGVTVHIPLQVLNQVTSEGFDWQIPGLREEV
VTELIRSLPKPIRRHYVPAPNYADKFLDRAVPLQEPLPVTLARELQRMVGVPVTADDFDL
SRVPDHLKITFRIVDERRRRVAEDKDLEALKLRLRPKARQALSKAAAATAGPSGESIERS
GLKDWTIGTLNKVFETRRAGQPVKAYPALVDQGETVAVHLFDTEAEQAQAMWRGTRKLIL
LNIPVNPAKFASDKLTNQQKLALSRNPHGSIQALFDDCATAAADRLIAAHGGPAWDEASF
RALYDKVRADLVDLTVRTIGQVQQILAAWQACERRLKATNSLVLINNVTDVRDHLARLMP
PGFVTATGLRRLPDLMRYLVAEDRRLQQMPTNVQRDTTRMEKVHEMQDEYAWLLEQLPKG
RPVPQEVLDIRWMIEELRVSYFAHALGTAFPVSDKRIVKAIDAAAP
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgatctccagtcccggctcgcgcagctctcgctccgcgacgcg
aaccggctcggccgccgcctcgaaggcgcccgccgcatccgcaagcccgaggcccagcgg
gccgtgctggacgagatcgccgcccaggcggacaagtcagccgggcggctcgaacagcgg
gccggccggatgcccgccctctcgtaccccgaacagcttccggtcagccagaagaaggac
gagatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgccggtgagaccggctcc
ggcaagaccacccagatccccaagatctgcatggagctgggccggggcctccggggcatg
atcgggcacacccagccgcgccggatcgccgcgcgcacggtggccgagcggatcgccgac
gagttgaagacaccgctcggcgagaccgtcggctggaaggtccgcttcaccgaccaggtg
aacccggacgcgaccttcgtcaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgctcgcctacgacacgatcatcatcgacgaggcccacgagcggtcc
ctgaacatcgacttcctgctcggctatctggcccggctgctgcccaggcgccccgatctg
aaggtcgtcgtcacctccgcgaccatcgacccggaacgcttctcgcgccatttcggcgac
gccccgatcatcgaggtcagcgggcgtacgtacccggtcgaggtgcgctaccgaccgttg
ctcgaagaagacggcgacgacgccgaccgggaccagatcaccgcgatctgcgacgccgtg
gacgagctccagggcgagggccccggcgacgtcctggtcttcctctccggcgagcgcgag
atccgcgacaccgctgacgcgctcggcaaacggaacctgcgcaacaccgaggtactcccc
ctctacgcgcgcctgtcgcacgccgagcagcaccgggtgttccagcgccacaccggccgc
aggatcgtgctggccaccaacgtcgccgagacctcgctgaccgtcccgggcatcaagtac
gtgatcgacccgggcaccgcccgcatctcccgctacagccaccgcaccaaggtgcagcgg
ctgccgatcgagcggatctcgcaggccagcgccaaccagcgcaagggccgctgcggccgc
acctcggacggcatctgcatccggctgtactccgaggacgacttcctgacccgcccggag
ttcaccgacgcggagatcctgcggacgaacctggcctccgtcatcctccagatgaccgcc
gccggcctcggtgacatcgagaagttccccttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtgcagctcctccaggagctcggcgcgctcgaccccgcggagaaggacccg
aagaagcggctcaccccgctcggccgcaagctctcgcagctgccggtggacccgcgcctg
gcccgtatggtcgtggaggccgaccgcaacggctgcgtacgcgaggtcatggtcatcgcc
gccgcgctctccatccaggacccgcgcgagcggccctccgacaagcagacgcaggccgac
cagcagcacgcccggttcaaggacgagacctccgacttcctggccttcctgaacctgtgg
cgctacatccgcgagcagcagaaggagcgcggctcctccagcttccgccggatgtgcaag
caggagtatctgaacttcctccgcatccgcgagtggcaggacatctacgcccagctgcgg
tccgtcgccaagcagatgggcatcgagctcaacgaagaggacgcccccgagcagtcggtg
cacacctcgctgctcgccggtctgctgtcgcacatcggtctcaaggacaccgagaagaac
gagtacctgggcgctcgcagcgccaagttcgcgatcttccccggttccgcgctgttcaag
aagcagccgcggttcgtgatgtcggcggagctggtggagacgtcccggctctgggcgcgg
gtcaacgccaaggtcgagccggagtggatcgagccgctggcccagcatctgctgaagcgc
acctacagcgagccgcactgggagaaggaccaggccgcggtgatggcgtacgagcgggtc
acgctgtacggcgtgccgatcgtcgcccagcgcaagatcaatttcggccggatcgaccag
gagacctcgcgggacctcttcatccgcaacgccctggtcgagggcgactggcgcacgcac
caccagttcttccacgacaaccgcaaactgctcggcgaggtcgaggagctggagcaccgc
gcccggcgccgcgacatcctcgtggacgacgagacgctgttcgacttctacgaccagcgc
atccccgaacacatcgtctccggcgcccacttcgactcctggtggaagcacaagcggcgc
gacgagccggacgcgctcgacttcgagcgctcgatgctcatcaacgagaaggccggggcc
gtcaccaaggacgactacccggactcctggcggcaggggaagctcaagttccgggtgacc
tatcagttcgagccgggcgcggacgccgacggggtgaccgtccacattccgctccaggtg
ctgaaccaggtcacgtcggagggcttcgactggcagatcccgggcctgcgcgaggaggtc
gtcaccgagctgatccgctcgctgccgaagccgatccgccggcactacgtgcccgcgccg
aactacgcggacaagttcctggaccgggccgtgcccctccaggagccgctgccggtgacg
ctggcccgggagctccagcggatggtgggggtcccggtcaccgcggacgacttcgacctg
agccgggtcccggaccacctcaagatcaccttccggatcgtggacgagcggcgccgcagg
gtcgccgaggacaaggacctggaggccctgaagctccggctgcgcccgaaggcccggcag
gccctctccaaggccgccgcggccaccgcggggccctccggcgagtccatcgagcgttcg
ggcctgaaggactggacgatcggcacgctgaacaaggtcttcgagacccggcgggccggc
cagccggtcaaggcgtatcccgcgctcgtcgaccagggcgagaccgtcgccgtacacctc
ttcgacacggaggccgagcaggcgcaggcgatgtggcggggcacccggaagctgatcctg
ctgaacatcccggtgaacccggcgaagttcgcctcggacaagctgacgaaccagcagaag
ctggccctgtcccgcaatccgcacggctcgatccaggccctgttcgacgactgcgcgacg
gcggccgccgaccggctgatcgcggcgcacggcggcccggcctgggacgaggcgtcgttc
cgggcgctctacgacaaggtgcgcgcggacctggtggacctgaccgtgcgcacgatcggc
caggtgcagcagatcctggcggcctggcaggcgtgcgagcgccggctgaaggccaccaac
agcctggtcctgatcaacaacgtcacggacgtacgcgaccacctggcgcgcctgatgccg
cccggcttcgtcaccgcgaccggactgcgccggctgcccgacctgatgcgctacctggtc
gcggaggaccgccggctccagcagatgccgaccaacgtccagcgcgacaccacgcgcatg
gagaaggtccacgagatgcaggacgagtacgcctggctgctggagcagctgcccaagggc
cgccccgtcccgcaggaggtgctggacatccggtggatgatcgaggagctgcgggtgagc
tacttcgcgcacgccctcggcaccgcgttccccgtctcggacaagcgcatcgtgaaggcg
atcgacgccgccgcgccctaa
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