Streptomyces drozdowiczii: NEH16_23805
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Entry
NEH16_23805 CDS
T09042
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz03030
DNA replication
sdrz03430
Mismatch repair
sdrz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NEH16_23805 (dnaE)
03430 Mismatch repair
NEH16_23805 (dnaE)
03440 Homologous recombination
NEH16_23805 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdrz03032
]
NEH16_23805 (dnaE)
03400 DNA repair and recombination proteins [BR:
sdrz03400
]
NEH16_23805 (dnaE)
Enzymes [BR:
sdrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NEH16_23805 (dnaE)
DNA replication proteins [BR:
sdrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NEH16_23805 (dnaE)
DNA repair and recombination proteins [BR:
sdrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NEH16_23805 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Fungal_KA1
Motif
Other DBs
NCBI-ProteinID:
UZK56703
LinkDB
All DBs
Position
5242956..5246492
Genome browser
AA seq
1178 aa
AA seq
DB search
MTKPPFTHLHVHTQYSLLDGAARLKDMFTACNDMGMTHIAMTDHGNLHGAYDFFHSAQKA
GVTPIIGIEAYVAPESRKHKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGEVQTRLRLGQFDEALKAASDYKD
IFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKTTDEMYGVDSSDAWQEGCANTLLVAQQIDTTGMFEKRD
LMPKFEIPEGYTEITWFQEEVRTGMNRRFPNGVPEDRQKQVEYEMDIIIQMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPIEHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLNGITDPSHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAIKMVKS
NKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFEDISAVSALY
RPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQVQKAAQIVAG
YSLGEADILRRVMGKKKPEELAKNFVLFEAGAKKKGFSDAAIKALWDVLVPFAGYAFNKA
HSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNES
ESNFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYSTFPDFLDKVEAVVCNKRTV
ESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEDSDEPGFGLD
VEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDAAISQLTGGEHADGAIVT
VGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDTVVFVKGRLD
KREDVPRLVAMEMQVPDLSSAGTNAPVVLTIPTVRVTPPMVSRLGEVLNSHRGDTEVRIR
LQGPRKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagccgcccttcacgcaccttcacgtccacacccagtactcgctcctggacggt
gccgcgcggctcaaggacatgttcaccgcgtgcaacgacatgggcatgacccatatcgcg
atgacggaccacggcaacctgcacggggcgtacgacttcttccactcggcgcagaaggcg
ggcgtgacgccgatcatcggcatcgaggcgtacgtcgcgcccgagtcgcgcaagcacaag
cggaagatccagtgggggcagccgcaccagaagcgcgacgacgtctccggttcgggtggt
tacacccacaagacgatctgggcggccaacaggacggggctgcacaacctcttcaagctg
tcctccgacgcctacgccgagggctggctccagaagtggccgcgtatggacaaggagacc
atctcccagtggtccgagggcctgatcgcgtccaccggctgcccctccggcgaggtccag
acgcggctgcggctcggccagttcgacgaggcgctcaaggcggcctccgactacaaggac
atcttcggcgaggggcgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacgggctcctggagatcggcaagaagctcggcatcccgccgctcgtgacg
aacgactcgcactacacgtacgcctccgaggcgaccgcgcacgacgccctgctctgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcaccggctactac
ctgaagaccacggacgagatgtacggcgtcgactcctccgacgcctggcaggaggggtgc
gccaacaccctcctggtcgcccagcagatcgacaccaccgggatgttcgagaagcgcgac
ctcatgccgaagttcgagatccccgagggctacacggagatcacctggttccaggaggag
gtccggacggggatgaaccgccgtttcccgaacggcgtcccggaggaccggcagaagcag
gtcgagtacgagatggacatcatcatccagatggggttcccggggtacttcctggtcgtc
gccgacttcatcatgtgggccaagaacaacggcatcgcggtcggcccgggacgaggctcc
gcggccggctcgatcgtctcgtacgcactcggcatcaccgacctcgacccgatcgagcac
gggctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgacgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtcatccggtacgtgacggagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggccaagaacgcgatcaaggac
tccgcccgcgtcctcggctacccgtacgccatgggcgaccggctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcaacggcatcaccgaccccagccacccgcgc
tacagcgaggcgggcgagatccgggggatgtacgagaacgagccggacgtcaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggcgtgcacgccgccggc
gtcatcatgtccagcgagccgatcgtggaccacgccccggtctgggtgcggcacaccgac
ggcgtcaccatcacgcagtgggactacccgcagtgcgaatcgctcggcctcctcaagatg
gacttcctggggctgcgcaacctgacgatcatggacgacgccatcaagatggtgaagtcc
aacaagggcatcgacctggagatgctcgccctcccgctcgacgaccccaagacctacgag
ctgctgtgccgcggtgacacgctcggcgtgttccagttcgacggcgggccgatgcgttcg
ctgctgcgccagatgcagcccgacaacttcgaggacatttccgccgtctcggccctctac
cggccgggcccgatgggcatgaactcgcacacgaactacgccgagcgcaagaacggccgc
caggagatcaccccgatccaccccgagctggaggagccgctcaaggaggtcctgggcctc
acctacggcctgatcgtgtaccaggagcaggtgcagaaggccgcccagatcgtcgccggg
tactcgctcggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgaggag
ctggcgaagaacttcgtcctcttcgaggccggcgccaagaagaaggggttctcggacgcg
gcgatcaaggcgctctgggacgtcctggtccccttcgccgggtacgcgttcaacaaggcg
cactcctccgcgtacgggctcgtcacctactggaccgcgtacctcaaggcgaactacccc
gccgagtacatggccgccctgctgacctcggtcaaggacgacaaggacaagtccgcggtc
tacctcaacgagtgccggcgcatgggcatcaaggtgctcccgccgaacgtcaacgagtcg
gagtccaacttcgccgcccagggtgacgacgtgatcctcttcgggctcacggccgtccgc
aacgtcggccagaacgtcgtggactcgatcatccggtgccgcaaggccaaggggaagtac
agcaccttccccgacttcctggacaaggtcgaggccgtcgtctgcaacaagcggaccgtg
gaatccctcatcaaggccggcgccttcgacgagatgggccacacccgcaaggggctcgtc
gcccaccacgagcccatgatcgacaacgtggtgcaggtcaagcgcaaggaggccgagggg
cagttcgacctcttcggcggcggcgaggaggacagcgacgagccgggcttcgggctcgac
gtggagttctccgacgtcgagtgggagaagtcctatctgctggcccaggagcgcgagatg
ctcgggctgtacgtctccgaccacccgctgttcggcctggagcacgtcctgtccgacaag
tcggacgcggcgatctcgcagctcaccggcggtgagcacgccgacggcgcgatcgtcacg
gtgggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgggcc
atcgccaccgtggaggacctggcgggctccatcgagtgcatgttcttccccgcgacctat
cagctggtctccacccagctcgtcgaggacaccgtcgtcttcgtcaaggggcgcctcgac
aagcgcgaggacgtgccgcgcctggtcgcgatggagatgcaggtccccgacctctcctcg
gccggcaccaacgcaccggtcgtcctgaccatccccacggtccgggtcaccccgccgatg
gtcagccggctcggcgaggtgctgaacagccaccggggcgacaccgaggtacgcatccgg
ctccagggcccccgcaagaccacggtgctccggctcgaccggcaccgggtgaagccggac
ccggcgctcttcggcgacctgaaggtgctgctcggcccgtcctgcctggcgggctga
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