Streptomyces drozdowiczii: NEH16_24225
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Entry
NEH16_24225 CDS
T09042
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sdrz
Streptomyces drozdowiczii
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdrz03019
]
NEH16_24225 (hrpB)
Enzymes [BR:
sdrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NEH16_24225 (hrpB)
Messenger RNA biogenesis [BR:
sdrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NEH16_24225 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_30
ResIII
AAA_22
AAA_25
NTPase_1
Helicase_RecD
AAA_11
HA2_N
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UZK56771
LinkDB
All DBs
Position
complement(5339650..5342157)
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AA seq
835 aa
AA seq
DB search
MIRTDALDRLPVRTAVPALRQALDGHGTAVLCAPPGTGKTTLVPLALAGLTGEGPVRRVV
VAEPRRIAARAAARRMAWLLGERTGQRVGFTVRGERVVGPETVVEVVTTGVLLQRLQRDQ
ELAGVDAVIIDECHERHLDADTVAAFLLDVRAALRPDLRLVAASATTDAEGWARLLGDAP
VIEAQGVSHPVEVVWAPPSVPVRPPHGMRVDPALLGHVAAVVRRALAERDGDVLCFLPGV
GEIGRVAGQLAGVGAEVLQVHGRAPAAVQDAVLAGSSEGRRVVLATSVAESSLTVPGVRT
VVDSGLAREPRTDHARGLSALATVRASQAAGRQRAGRAGREAPGTVYRCWDQAEDGRLAR
FPAPEIRVADLTAFALQAACWGDPDASGLALLDAPPEGAMAAARDVLGAVGAVGPDGRVT
ERGVRMSRLGLHPRLARALLDGAAEVGGRRAAEVVALLSEEPPRAYGDDLAAALRTARRG
QDAYAGRWRQEVRRLSSALKGDGGSSGRSVADDAAVGLVAALAFPERVARARGGGAFLMA
SGTGAEPGEGSGLRGAPWLAVAVADRPAHAASARVRLAAVIDEDTALLAAGPLRFAGEEV
RWDGRDVVARRVERLGAVELAARPLKQPDPGLVRDALVAGLRREGPGLLRWSRDAGQLRE
RLAFLHRVLGGPWPDVSDGALLADPGAWLEPELSRARRRSDLAAIDAGQALRRLLPWATG
EAVRLDELAPERIEVPSGSRIRVEYGGDQPVLAVKLQELFGLQETPRVAGVPVLVHLLSP
AGRPAAVTADLASFWRDGYKAVRAELRGRYPKHPWPEDPTTVEATRFTKARLKRE
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcaccgacgccctcgaccggctgcccgtccgcaccgccgtccccgccctccgg
caggcgctggatggccacggcaccgcagtgctctgcgcgccgcccggcaccggcaagacc
accctcgtacccctcgccctggccgggctgaccggcgagggcccggtgcgccgggtcgtc
gtcgccgaaccgcgccggatcgccgcccgcgcggcggcccggcggatggcgtggctgctg
ggcgaacggaccgggcagcgcgtcgggttcaccgtgcgcggcgagcgggtggtgggcccg
gagaccgtggtggaggtcgtcaccaccggggtgctgctccagcggttgcagcgcgaccag
gagctggccggggtggacgcggtgatcatcgacgagtgccacgagcgccacctcgacgcg
gacacggtggccgcgttcctgctggacgtgcgcgccgcgctccgcccggacctgcgcctg
gtggcggcgtccgcgacgacggacgcggagggctgggcgcggctgctcggggacgccccg
gtgatcgaggcgcaaggggtgtcgcatccggtggaggtggtgtgggccccgccgtccgtg
ccggtgcggccgccgcacgggatgagggtcgacccggcactgctgggccatgtcgccgcc
gtggtgcggcgggccctcgccgagcgggacggcgacgtgctgtgcttcctgcccggcgtc
ggcgagatcggccgggtggcgggccagttggcgggtgtcggggcggaagtgctccaggtg
cacgggcgggccccggcggccgtgcaggacgcggtgctggccgggtcgtccgaggggcgt
cgggtggtcctggcgacctcggtggccgagtcctcgctgacggtccccggggtgcggacg
gtggtcgactcggggctcgcccgggagccgcgcaccgatcacgcccgggggctgagcgcg
ctggcgaccgtacgggcctcgcaggcggcgggccggcagcgcgcggggcgtgcggggcgc
gaggctcccgggacggtgtaccgctgctgggaccaggccgaggacggtcggctggcccgc
ttccccgcaccggagatcagggtggccgacctgacggcgttcgccctccaggcggcctgc
tggggcgacccggacgcctcggggctcgccctgctcgacgcgccgccggagggcgcgatg
gccgccgcgcgcgacgtgctcggcgcggtcggcgcggtcggcccggacggccgggtcacc
gagcggggcgtgcggatgtcccggctcggactgcacccccggctggcccgggcgctgctg
gacggggcggccgaggtgggcgggcgccgggccgccgaggtggtggcgctgctgagcgag
gaaccgccgcgcgcgtacggggacgatctggcggccgcgctgcgcaccgcgcgccggggc
caggacgcctacgcgggccgctggcgccaggaggtgcggcgcctgtcgtccgcgctgaag
ggcgacggcggttcctccggccggagcgtcgccgacgacgcggccgtcggtctggtggcc
gccctggcgttcccggagcgggtggcgcgggcgcggggcggcggggcgttcctgatggcg
tcgggcacgggcgcggagccgggcgagggctcggggctgcgcggggcgccctggctggcc
gtggcggtcgcggaccggccggcgcacgcggcctccgcccgggtgcgcctggcggccgtc
atcgacgaggacaccgcgctcctggcggcggggccgctgcggttcgcgggcgaggaggtc
cgctgggacggccgggacgtggtggcccgccgggtggagcggctgggggcggtcgagctg
gccgcgcgcccgctgaagcagcccgacccgggactggtccgggacgcgctggtggcgggg
ttgcggcgggagggcccggggctgctgcggtggagccgggacgcggggcagctgcgggag
cggctggccttcctgcaccgggtgctgggtgggccgtggccggacgtgtcggacggggcg
ctgctcgcggaccccggggcctggctggagcccgagctgtcccgggcgcggcgccgctcc
gacctggccgcgatcgacgcggggcaggcgctgcggaggctgctgccgtgggcgacgggc
gaggcggtccgcctggacgagctggcgccggagcggatcgaggtgccgagcggttcgcgg
atccgggtggagtacggcggggaccagccggtgctcgcggtgaagctccaggagctgttc
ggcctccaggagaccccgcgggtggcgggcgtaccggtgctggtgcacctgctctccccc
gccgggcggccggcggcggtgacggcggacctggcgtcgttctggcgcgacggctacaag
gcggtccgggcggagctgcgcggccgctacccgaagcacccgtggccggaggacccgacg
acggtggaggcgacccggttcacgaaggcgcggctgaagcgggagtga
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