Streptomyces drozdowiczii: NEH16_24715
Help
Entry
NEH16_24715 CDS
T09042
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz00040
Pentose and glucuronate interconversions
sdrz01100
Metabolic pathways
sdrz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
NEH16_24715
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NEH16_24715
Enzymes [BR:
sdrz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
NEH16_24715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UZK56857
LinkDB
All DBs
Position
5444116..5445462
Genome browser
AA seq
448 aa
AA seq
DB search
MSTRISVRRNHARAIAVTMGCASLALALSLPAQAAPQPHGTKSAERAVLAKGDGWASAEG
STTGGAAATPDHVYTVHNRAELIAAFEDAGDAPKIVRIAGTVHGNADAEGNPIDCEAYQT
DGYTLDKYLAAYDPGTWGREEVPSGPLEDARLASAKLQKAAVNVYVPSNTTLIGTGRDAT
VIGASIQIQNVSNVIVRNISFEDTYDCFPQWDPTDGDTGHWNSEYDNLVVYGSDHVWVDH
NTFSDGDRPDADQPRYFNELYQQHDGLFDIVKGADLVTASWNVLKDHDKTMLLGNSDKAG
DTDRGKLRVTLHHNLFKDVNERAPRVRFGQVDSYNNHFVATKGSVYGYSYGIGAESHLVA
EHNAFTLSGEFDQAKILKKWSESSLTAADNWVNGRRTDLIAVHNAGVPEEQLTTGAGWTP
TLRNRVDHPLLVPLVVGLGAGAGRLPGA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacgcatttctgtccgcagaaaccacgcccgtgccatcgccgtcacgatgggc
tgcgcctcgctggccctcgccctgagcctccccgcgcaggccgccccgcagccccacggc
acgaagagcgccgagcgcgccgtcctcgcgaagggcgacggctgggcctccgccgagggc
tccaccaccggtggcgccgccgcgacgcccgaccacgtctacaccgtgcacaaccgcgcc
gaactcatcgccgccttcgaggacgcgggcgacgccccgaagatcgtccggatcgccggg
accgtgcacggcaacgccgacgccgagggcaacccgatcgactgcgaggcgtaccagacc
gacggctacaccctggacaagtacctcgccgcctacgaccccggcacctggggccgcgag
gaggtcccgtccgggccgctggaggacgcccggctcgcctccgccaagctccagaaggcc
gccgtcaacgtctacgtcccgtccaacaccacgctgatcggcaccggccgggacgccacg
gtcatcggcgcctcgatccagatccagaacgtctccaacgtcatcgtccgcaacatctcc
ttcgaggacacctacgactgcttcccgcagtgggacccgaccgacggcgacaccggccac
tggaactccgagtacgacaacctcgtcgtctacggctccgaccacgtctgggtcgaccac
aacaccttcagcgacggcgaccgccccgacgccgaccagccccggtacttcaacgagctg
taccagcagcacgacgggctcttcgacatcgtcaagggcgccgacctggtgaccgcctcc
tggaacgtcctcaaggaccacgacaagaccatgctcctcggcaacagcgacaaggccggg
gacaccgaccggggcaagctccgcgtcaccctgcaccacaacctcttcaaggacgtcaac
gagcgggcgccccgcgtccgcttcggccaggtcgactcgtacaacaaccacttcgtcgcc
acgaagggcagcgtctacggctactcgtacgggatcggcgccgagtcccacctcgtcgcc
gagcacaacgcgttcacgctcagcggtgagttcgaccaggcgaagatcctcaagaagtgg
tcggagtcctcgctcacggccgccgacaactgggtcaacggccgccgcaccgacctgatc
gccgtccacaacgcgggcgtgcccgaggagcagctgaccacgggcgccggctggaccccg
accctccgcaaccgggtcgaccacccgctgctggtgccgctcgtcgtgggcctcggcgcg
ggcgcgggccggctgcccggcgcctga
DBGET
integrated database retrieval system
