Streptococcus dysgalactiae subsp. equisimilis GGS_124: SDEG_1254
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Entry
SDEG_1254 CDS
T00932
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sds
Streptococcus dysgalactiae subsp. equisimilis GGS_124
Pathway
sds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SDEG_1254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sds03019
]
SDEG_1254
Messenger RNA biogenesis [BR:
sds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SDEG_1254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
ODP
Motif
Other DBs
NCBI-ProteinID:
BAH81749
LinkDB
All DBs
Position
1:complement(1202955..1204616)
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AA seq
553 aa
AA seq
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MTDIKLIALGGVREYGKNFYLVEINDSMFILDAGLKYPENEQLGVDLVIPNLDYVIENKD
KVQGIFLSHGHADAIGALPYLLSEVSAPVFGSELTIELAKLFVKGNNNTKKFNNFHVVDS
ETEIEFKDGLVSFFKTTHSIPESMGVVIGTDKGNIVYTGDFKFDQAAREGYQTDLLRLAE
IGKEGVLALLSDSANATSNDQIASESEVGEEMDSVIADADGRVIVAAVASNLVRIQQVFD
SAVAYGRRVVLTGTDVENIVRTALRLKKLMITDERLLIKPKDMSKFEDHELIILEAGRMG
EPINSLQKMAAGRHRYVQIKEGDLVYIVTTPSTAKEAMVARVENLIYKAGGSVKLITQNL
RVSGHANGRDLQLLINLTKPQYLFPVQGEYRDLAAHAKLAEEVGIFPENIHIMKRGDIMV
LNEEGFLHEGGVPASDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVSKKEKRIISK
AKVNTRGFVYVKKSRDILRESAELVNKTVEAYLQKDTFDWGELKGNVRDDLSKFLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatcaaattgattgccttaggaggggtccgtgaatacggaaagaacttctat
ttggtagaaattaacgattccatgtttattttggatgctgggcttaaatacccagaaaat
gaacaacttggggttgatttagttatccccaatttagactatgtgattgaaaacaaagac
aaggtccaagggattttcttgagccatgggcatgcagatgccattggtgccttaccgtat
ttattgtcagaagtatcggctcctgtctttggatctgaattgaccatcgagctggcaaaa
ttatttgtcaaaggcaataataacactaagaaatttaacaatttccatgtggtggatagt
gaaacagaaatcgaatttaaagatggcttggtgtccttctttaaaacaacacactctatt
ccagaaagcatgggagtagtgattggcacagacaaaggaaatattgtttataccggtgac
ttcaagtttgaccaggcggcccgtgaaggttaccagacggatttactacgtctagctgag
attgggaaagaaggagtcttagctcttttgtctgattctgcaaatgccactagcaatgat
cagattgctagtgaatctgaagttggggaagaaatggacagtgttattgcagacgctgat
ggccgtgtgattgtggcggcagtggcgtctaaccttgtccgtatccagcaggtctttgat
tcagctgttgcctatggccgtcgtgtggtcttaacgggaacagacgttgaaaatattgta
cgaacagctctacgattgaaaaaattgatgattacagacgaacgtttgctgatcaaacca
aaagacatgtctaagttcgaagaccacgaacttattattcttgaagctggtcgcatgggt
gagcctatcaacagtttgcaaaaaatggcagcgggacgtcatcgttatgttcagattaaa
gaaggcgaccttgtttacatcgtgacaacgccaagtactgcaaaagaagctatggtggcg
cgtgttgaaaacttgatttacaaggctggtggttctgtcaaactaattacccaaaactta
cgtgtctcagggcatgcgaatggacgtgatttgcaactgttgatcaatttaacgaagcct
cagtatctcttcccagttcagggagagtaccgtgatctagctgcccatgctaagttagct
gaagaggtcggtattttccctgaaaatattcatattatgaaacggggcgatatcatggtt
cttaatgaggaaggtttcctccatgaaggaggtgtgcctgccagcgatgtcatgattgat
gggaatgctatcggtgatgttggtaatattgtattaagagaccgtaaagtcttgtcagaa
gatggtatctttattgttgctattacagtttccaaaaaagaaaaacgcattatttcaaaa
gccaaggtgaacactcgcggatttgtctatgttaagaaaagtcgtgatattttaagagag
agtgctgagttggtcaataaaacggttgaagcctatctccaaaaagatacctttgattgg
ggagaattaaaagggaatgtcagagatgatttgtctaaattcttatttgaacaaaccaaa
aggcgcccagcgattctgccggttgtgatggaagttcgttag
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