Streptococcus dysgalactiae subsp. equisimilis GGS_124: SDEG_1455
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Entry
SDEG_1455 CDS
T00932
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sds
Streptococcus dysgalactiae subsp. equisimilis GGS_124
Pathway
sds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SDEG_1455 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sds03019
]
SDEG_1455 (deaD)
03009 Ribosome biogenesis [BR:
sds03009
]
SDEG_1455 (deaD)
Enzymes [BR:
sds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SDEG_1455 (deaD)
Messenger RNA biogenesis [BR:
sds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SDEG_1455 (deaD)
Ribosome biogenesis [BR:
sds03009
]
Prokaryotic type
rRNA helicases
SDEG_1455 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
DUF1924
Motif
Other DBs
NCBI-ProteinID:
BAH81950
LinkDB
All DBs
Position
1:complement(1409205..1410824)
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AA seq
539 aa
AA seq
DB search
MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLF
SATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMIENLTKK
QMKPLRPATAEEAFQAKKKVALKKIERDFADDAIRSNFDKFKGDAIQLAAEFTPEELALY
ILSLTVQDPDSLPEVEIAREKPLPFKYVGGGHGNKNGKGGRGRDNRNRGDRRGGYRGDRN
RDERDGDRRRQKRDKRDGHDGSGNRDFKRKSKRNSKDFFNKEKKSSAKNTGFVIRHKGE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaatttaacttatcagaagacatccaatcagctgtcgttaccgctggt
tttgagaaagcatctcctatccaggaaatgacgattcctctcgcactagaagggaaggat
gttattggtcaggcacaaacaggaactggtaaaacagcagcgtttggtctaccaaccttg
aataagattcgtactaacgaaaatatcatccaagcattggtcattgcaccaacgcgtgaa
ttggctgtacaaagtcaggaagaattgttccgttttggacgtgaaaaaggggttaaggtt
cgctctgtttacggtggatcaagtattgaaaaacaaatcaaagcccttaaatcaggtgcc
cacattgtcgtgggaacaccaggccgcttgttagatttgattaagcgcaaggctcttatt
ttagatcatgtggaaaccttaatccttgatgaagcagatgagatgcttaacatgggattc
ttggaagacattgaagctattattagtcgtgtcccagcagaccgtcaaaccttgctcttc
tccgcaacgatgccagcacctattaaacaaatcggggtaaaattcatgaaagaccctgag
catgttcaaattaagaacaaagaattaaccaacgtgaatgttgatcaatactatgtccgt
gtgaaggaacaagaaaaatttgataccatgacacgtttgatggatgttaaccaacctgaa
ttatctattgtttttggtcggactaaacgtcgtgttgatgagattacacgtggtctaaaa
ttacgtggtttccgtgccgaaggaatccatggtgatctagaccaaaataaacgcttacgc
gttatccgtgatttcaaaaacgatcaaattgatattcttgtagccactgatgtggcagca
cgtggtcttgatatttcaggagttacccacgtttataactacgatattacccaagatcca
gaaagttatgttcaccgtattggccgtactggtcgtgcgggtaaatcaggtgagtcaatc
acttttgtctcaccaaatgagatgggctacctctcaatgattgagaacttaacgaaaaaa
cagatgaaacctctccgcccagcaactgcagaagaggctttccaagccaagaaaaaagta
gcccttaaaaaaattgaacgtgattttgcggatgatgctattcgttctaactttgacaaa
ttcaaaggagatgctatccaattagcagctgaattcactccagaagagttggcattgtat
attttgagcttaacggttcaagatccagatagcttaccggaagttgaaattgcacgtgaa
aaaccattaccattcaaatatgtgggtggtggtcacggcaataaaaatggcaaaggtggt
cgtggacgtgacaaccgtaaccgtggtgatcgccgtggcggctatcgtggtgaccgtaac
agagatgagcgtgatggtgaccgtcgtcgtcaaaaacgtgataagcgtgatggtcacgat
ggcagtggcaaccgcgatttcaaacgtaaatcaaaacgtaatagtaaagactttttcaat
aaagagaaaaaatcaagtgctaaaaatactggttttgtgattcgtcacaaaggtgaataa
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