Streptococcus dysgalactiae subsp. equisimilis GGS_124: SDEG_1925
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Entry
SDEG_1925 CDS
T00932
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sds
Streptococcus dysgalactiae subsp. equisimilis GGS_124
Pathway
sds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SDEG_1925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sds03019
]
SDEG_1925
Messenger RNA biogenesis [BR:
sds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SDEG_1925
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
SIS_2
Motif
Other DBs
NCBI-ProteinID:
BAH82407
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All DBs
Position
1:1854725..1856407
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AA seq
560 aa
AA seq
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MTNISLKPNEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYS
YIVDNLDRVKALVITHGHEDHIGGIPFLLKQANIPIYAGPLALALIRGKLEEHGLWRDAT
VHEINHNTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIICTGDFKFDFTPVGDPADL
HRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSILKIIEGIHGRIIFASFASNIYRL
QQAAEAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKGTFIEANELKNYHANEVLIMCT
GSQGESMAALARIANGTHRQVSLQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVEVIHG
KVNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAMDTGIPKENIFIMEN
GDVLALTSDSARIAGHFNAQDIYVDGNGIGDIGTAVLRDRRDLSEDGVVLAVATVDFETQ
MILAGPDILSRGFIYMRESGDLIRESQRVLFNAIRIALKNKDASIQSVNGAIVNALRPFL
YEKTEREPIIIPMVLTPDKD
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatatcagtttaaaacctaatgaagttggggtttttgccatcggtggtctcggg
gaaatcggaaaaaacacttacgggattgaataccaagacgaaatcatcatcgttgatgct
ggtattaaattcccagaagacgacttattgggaattgactacgttattccagactattct
tatattgttgataatttggatcgggttaaggcccttgtcatcacacacggtcacgaggac
catatcggtgggattcctttcctcctcaaacaggctaatatccctatctatgcaggacct
ttagccctcgccctcatccgtgggaaattggaagaacacggtctctggcgtgacgctacg
gttcacgaaatcaatcacaacactgaactaaccttcaaaaacatgagtgtaaccttcttt
aggacgactcactccatccctgaaccccttggtattgtgattcataccccacaaggaaaa
atcatctgtacaggggactttaagtttgactttaccccagtaggagacccagctgacttg
caccgtatggctgcgctgggtgaagaaggcgttctttgcctactctctgattcgaccaat
gcggaggtcccaacctttaccaattctgaaaaagtcgttggccagtccatcttgaaaatt
atcgaaggcattcatggacgcattatctttgcttccttcgcttcaaacatctaccgtttg
caacaggctgctgaagctgctgtcaaaactggacgtaaaattgctgtctttggacgatca
atggaaaaagcgatcgttaacgggattgaacttggctacatcaaggttccaaaaggcacc
tttattgaagcaaatgagcttaaaaactaccatgccaatgaagtattgatcatgtgtaca
ggtagtcagggagaatcgatggctgcgcttgctcgtattgccaacgggacacatcgccaa
gttagcttacaaccaggcgacacggttattttctcatctagcccaattccaggaaacacc
acaagtgtcaacaaactgatcaacaccatccaagaagctggcgttgaagttatccacgga
aaagtgaataatatccacacgtcagggcacggtggccagcaagagcaaaaactcatgctg
cgcttgattaaaccaaaatatttcatgcctgttcatggggaataccgtatgcaaaaagtc
cacgcaggactcgctatggataccggtattccaaaggaaaatatctttatcatggaaaac
ggcgacgtccttgccttgacaagtgatagtgctcgtattgcaggtcattttaacgcacaa
gacatttacgttgatggaaatggtattggcgatattggtacagctgtcttgagagaccgt
cgtgatttatcagaagatggtgttgttttagctgttgctactgttgattttgagactcaa
atgattctagctggaccagatattctaagtcgtggcttcatttacatgcgtgagtcaggc
gacttgattcgcgaaagccaacgggtgttattcaatgctatccgtattgccttgaaaaac
aaggatgccagcatccaatcagtcaacggggccattgtcaacgcccttcgtccgttccta
tatgaaaaaaccgaacgtgaacctattattattccgatggtcttgacaccggacaaagac
taa
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