Staphylococcus pseudintermedius ED99: SPSE_1156
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Entry
SPSE_1156 CDS
T02008
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sdt
Staphylococcus pseudintermedius ED99
Pathway
sdt03410
Base excision repair
sdt03430
Mismatch repair
sdt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPSE_1156 (recJ)
03430 Mismatch repair
SPSE_1156 (recJ)
03440 Homologous recombination
SPSE_1156 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdt03400
]
SPSE_1156 (recJ)
DNA repair and recombination proteins [BR:
sdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SPSE_1156 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SPSE_1156 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPSE_1156 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADX76426
LinkDB
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Position
1188687..1190972
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AA seq
761 aa
AA seq
DB search
MIKSKFQWQTDTNRQSMDDVLVEQYKLTPLMRYILESKGYTEATQLAQVLSASKDNMHNP
SLMSDMDKAVKRIHTAIQNQEKILVYGDYDADGVTSTTIMVKTLQQLGAIVGWYIPNRFT
EGYGPSEPAFKNAYDEGVSLIITVDNGIQGHTEIEMVQNLGVDVIVTDHHEIGDTLPAAY
AIVHPMHPDYDYPFISLCGAGVALKLAQSLLGDVPNIFWIYAMIGTIADLVSLTDENRFI
VQHGLQLLNESPPVSIAAILNQAQFNDTVTEETIGFIIGPRLNAVGRLDDAALAAELLMT
DDAEEALFLAEQVEHFNVERKDIVQTIVDEAMVMAEDAIQAGEHFLVLAKEDWHEGVLGI
VASRIVETFHLPTMVLNIDHEQQHAKGSSRSITQVSMFEALSSQQTLISKFGGHHMAAGL
TLPIDQVSALREGLNDWMRTHIDTTALQPIQKVDVTIDVGHITVEQIQSIERLRPFGTDF
KRPIIQVNGLTVLQSKGIGQQQAHLKMTFVEQNLQALFWNQGALSSELMPNQHVDVTGEL
QINEWNGNRTAQMVLTDMKSNERQILDYRSKNKRLPVFEDDQHVCYLIHPNQDKTSAHEY
YYGENIPQQYDKCVMRDLPLTMEDIKLSCHYLNTSQVYLVFQHDRSIYFEGLPQPADFKN
CYKALYQKGQTDLQKDGVALSQFINVKPMLLKFILKVFLDLGIISQKNGIIEIVHSTDKQ
PITSSRVYQARVQRIEVEKQLLYEEFGAIKSWIENELARNE
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgataaaatctaaatttcaatggcaaaccgatacaaatcgtcaatcgatggacgacgta
ttggttgaacaatataaattaacccctttgatgcgctatattttagaaagtaaaggctat
actgaggcaacacaactcgcacaagtactatcagcttctaaagacaatatgcataatcca
agtttgatgagtgacatggataaagccgtcaaacgtatacatacagcgattcaaaatcaa
gaaaaaattttagtgtacggggattatgacgcagatggtgtgacgtctacaacgattatg
gtcaagacactccagcaacttggagcaattgttggttggtatattcctaaccgttttact
gaaggctacggcccgagtgagcctgctttcaaaaatgcgtatgatgaaggggtttctctc
atcattacggtagataatggcatacaaggtcatacagaaattgaaatggttcaaaattta
ggtgtggatgtcattgtaactgatcaccatgaaataggtgatacattaccagcggcgtat
gcgattgttcacccgatgcatccagattatgactatccatttattagcttgtgtggtgcc
ggtgtagcattgaaattagctcaaagtttgctcggggatgttccgaatatattttggatt
tatgccatgataggtaccattgcggatcttgtttctttaacagatgaaaatcgctttatt
gttcaacatggtttgcaattattgaatgaaagtccacccgtttcaattgcggctatcctc
aatcaagcgcaatttaatgatacagtgactgaagaaacgatcggctttatcattggaccg
aggttaaatgcggtaggacggttagacgatgcggcacttgcggcagaattgctcatgaca
gatgatgcagaagaagcactctttttagctgagcaagtcgaacatttcaatgttgaacgg
aaagatattgtacaaacgattgttgatgaagctatggtcatggctgaagatgcaatccaa
gcaggcgaacactttttagttctcgcaaaagaagactggcatgaaggcgtcctgggaatt
gttgcctcaagaattgtggaaaccttccatttaccaacaatggtattaaatattgaccac
gaacaacaacatgcaaaaggttcttctcgtagtattacgcaagtgtcaatgtttgaagca
ttatcatcacaacaaacattaatttcaaaatttggtggacaccatatggcggcaggttta
actttacctatcgaccaagtttctgcattgcgtgaaggattaaacgattggatgcgcacg
cacattgatacgaccgcgttacaaccgattcaaaaagtggacgtcactatagatgttggt
cacattacagtggaacaaattcaatccattgagcgtttacgaccgtttgggacagatttt
aaacgaccgattattcaagttaacggtctgactgtgttacaaagtaaaggtattggacaa
caacaagcgcacttaaagatgacctttgtcgaacaaaacttacaagcattattttggaat
caaggtgcgttatcaagtgagttaatgcctaaccaacatgttgatgtcacaggcgaactt
cagattaatgaatggaatggcaatcgtacggcacaaatggttttaacagatatgaaaagt
aatgaacgtcaaattttagattatcgtagtaaaaataaacgtttgccagtatttgaggat
gatcaacatgtttgttatttaatccatccgaatcaagacaaaacatcagcgcatgaatat
tactacggtgaaaacataccacagcagtatgacaaatgtgtgatgcgtgacttaccttta
acgatggaggatattaagttatcttgtcattatttaaatacatctcaagtgtatttagtg
tttcaacatgaccgttcgatttattttgaaggattaccacagcctgcagattttaaaaat
tgttataaagcattgtatcaaaaaggacaaaccgatttacaaaaagacggggtggcttta
agtcaatttattaacgttaaaccgatgttgctcaaatttattttaaaagttttccttgat
cttggaatcatttctcaaaaaaatggtataatcgagattgtgcattcaacagataaacaa
cccatcacctctagccgtgtttatcaagcgcgtgtacagcggattgaggtagagaagcag
ttactttatgaagaatttggcgccattaagtcttggatagaaaatgaattggcacggaat
gaatga
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