Staphylococcus pseudintermedius ED99: SPSE_1516
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Entry
SPSE_1516 CDS
T02008
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
sdt
Staphylococcus pseudintermedius ED99
Pathway
sdt03030
DNA replication
sdt03430
Mismatch repair
sdt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPSE_1516 (polC)
03430 Mismatch repair
SPSE_1516 (polC)
03440 Homologous recombination
SPSE_1516 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdt03032
]
SPSE_1516 (polC)
03400 DNA repair and recombination proteins [BR:
sdt03400
]
SPSE_1516 (polC)
Enzymes [BR:
sdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPSE_1516 (polC)
DNA replication proteins [BR:
sdt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPSE_1516 (polC)
DNA repair and recombination proteins [BR:
sdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPSE_1516 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
HHH_3
tRNA_anti-codon
RNase_H_2
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ADX76775
LinkDB
All DBs
Position
complement(1545964..1550271)
Genome browser
AA seq
1435 aa
AA seq
DB search
MTLQNQEKFKILLKQVNMLDHFDQDFIDQGQLTRVDVSPKSRKWTFHIRLPRLLKYEDYA
VFTHAMKESFQHIADVDWKITVNDVSQQDEYLLKYLGDCIEQTQLSPKVKGQLKQKRMIV
SGDVVKILVQNDIEGNHFNKVCNGSLVRAMQRCGFNIQKVVFETDESGHDEDLASLEAHI
QEEDELSAREATAKIEKMKEQRAQQDDEVAVERCQIGKPIQVENVRPIESIIEEEFKVAI
EGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKNDLDHFKSLKEGQWVRAQGR
IEEDMFIRDLVMMMSDIEAIKRTPKMDKAAEKRVEFHLHTSMSQMDGVTHIGDYVAQAAQ
WGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIYGMEGMLVDDGVPIAYKPSDIMLQDATY
VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDKFERFSNPHEKLTETIKNLTHITDDMLK
DAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSANAVIDTLELSRTIN
TSYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFVKMLAQLKALDVHNHQDINKKLSN
EDAYKRARPQHVTLIVQNQTGLKNLFKIVSASLVQYYYRTPRIPRSLLDEHREGLLVGTA
CDEGEVFTAVMQRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIRDNETLVEIYERILK
VGETNQIPVIATGNAHYLHEHDAIARRILIASQPGNPLNRSTLPEAHFRTTDEMLDAFHF
LGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELP
QIVIDRLEKELESIIGNGFAVIYLISQRLVKKSLEDGYLVGSRGSVGSSFVATMTEITEV
NPLPPHYICPSCKKSEFFDDGSVGSGFDLPDKTCECGTEMIKEGQDIPFETFLGFKGDKV
PDIDLNFSGEYQPKAHNYTKVLFGEEYVYRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGA
EVDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSSWMTTHFDFHSIH
DNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDQQTMRIFSSPEALGVTEEEILAKTG
TFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRSGTCTLSSCIG
CRDDIMVYLMYAGLEPSLAFKIMEAVRKGKGLTEEFEQVMKENNVPDWYMDSCKKIKYMF
PKAHAAAYVLMAVRIAYFKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYAR
YMDLGKKEKDVLTVLEIMNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGE
NVAKRIVEAREEGPFLSKEDLNKKAGVSQKIIEYLDSLGSLPNMPDKAQLSIFDM
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
ttgacattacagaatcaagaaaaatttaagattcttcttaaacaagtgaatatgttagac
cattttgatcaagacttcattgatcaaggccaattgacacgtgtagatgtatccccaaaa
tcacgaaaatggacgtttcatattcggttgccacgattgttaaaatatgaagattatgca
gtctttacccatgcgatgaaagaaagcttccaacatattgcagatgtagattggaaaatt
acggtcaatgatgtgtcacaacaagatgaatatttactgaaatatttaggtgattgtata
gaacaaacacaattgtcgcctaaagtgaaagggcaactaaaacaaaaacgtatgattgtc
tcaggtgatgttgttaaaattctcgtccaaaatgatattgaggggaaccatttcaataaa
gtgtgcaacggcagcttagtgcgcgcgatgcaacgatgtggttttaatattcaaaaagtt
gtatttgaaacagatgaaagtggtcacgacgaagatttagcatcattagaagctcatatt
caagaggaagatgaactaagtgcacgcgaagcaactgctaaaattgaaaaaatgaaagaa
caacgtgcacaacaagatgatgaagtggccgtcgaacgttgtcaaattggtaagccgatt
caagttgaaaatgttcgaccgattgaatcgattattgaagaagagtttaaggtggcaatt
gaaggtgtcattttcgacattaatttaaaagagttgaaaagtggccgtcacatcgttgaa
ttaaaggtgacagactatacggattcactcgtacttaaaatgtttacacgtaaaaacaaa
aacgacttagaccatttcaaatcattaaaagaaggtcaatgggtgcgtgcacaaggtcgt
attgaagaagatatgttcattcgcgacctcgtgatgatgatgtctgacattgaagcgatt
aaacgcacaccaaaaatggataaagctgcggaaaagcgtgtagaattccatttgcataca
tcaatgagtcaaatggatggtgtgacgcatattggtgattatgtcgcacaagctgcacaa
tggggacatgatgcgattgcagtaacggatcataacgtcgtacaagcttatcctgatgca
catgctgcagctgaaaagcatggtattaaaatgatttatggaatggaaggcatgctcgtt
gatgatggtgtgccgattgcgtataaaccgtcggatattatgctccaagatgcgacatat
gttgtatttgacgtcgagactaccggattatccaatcagtacgataaaatcatcgagttg
gccgccgtgaaagtgaaaaatggtgaaattattgataagttcgaacgatttagtaatccg
catgaaaagttaactgaaacgattaaaaacttgacgcatattacagatgatatgttaaaa
gatgcgcctgaaattgaagaagtgcttactgaatttaaagcatgggtaggcgatgcgatt
ttcgttgcacataatgcatcgttcgatatgggctttatcgataccggttatgaacgtctc
gggtttggtccttcggcaaatgcggttattgatacacttgagttgtcacgtacgattaac
acaagttatggcaaacacggcttgaactttttagctaaaaaatatggcgtggagctcaca
caacatcaccgtgcgatttatgatacggaagcaacagcttatattttcgtgaagatgttg
gcgcaattaaaagcgttagatgtgcacaaccaccaagatatcaacaaaaaattatcgaat
gaagatgcttataaacgtgcacgcccgcaacacgtcacattaattgtgcaaaatcaaacc
ggtcttaaaaacttgtttaaaattgtcagtgcgtctctcgtgcaatattattaccgtaca
ccacgtattccacggtcattactagatgaacatcgtgaaggcttgttagtcggtaccgca
tgcgatgaaggtgaagtatttactgccgtcatgcagcgagatcaatctgaagttgaacgg
attgcgaaatattatgattatattgaagtgcaaccgcctgctttgtaccaagatttacta
gatcgtgacttgattcgtgataatgaaacgcttgtcgaaatttatgaacgtattttaaaa
gtgggagaaacgaatcaaattccagtaattgcgacaggcaatgcccactatttacatgaa
catgatgcgattgcacgtcgtattttaattgcctctcaacctggtaacccgttgaaccgt
tcgacgttaccagaagcacattttagaacgacggatgaaatgttagatgcttttcatttc
ttaggtgaagaacgtgcgcaccaaatcgtcgttgaaaatacgcgtgcgttggcagagcgc
attgaaaaggtcgttccaattaaagataaactgtatacgcccaatatggaaggcgcaaat
gaagaaattcgtgaaatgagttatcgtcatgcgaaacagttgtacggtgaagaattacca
cagattgtgattgaccgtctagagaaagagctagaaagtattatcggtaacggatttgcg
gttatttatttaatttcgcaaagactcgttaaaaagtcattagaagatggctatttagta
ggttctcgtggttcggtcgggtcaagctttgttgcgacaatgacggaaattacagaagtg
aacccactgccaccgcattacatttgtccaagttgtaaaaagagtgagtttttcgatgat
ggttcagtcggttcaggctttgacttacctgataaaacgtgtgaatgtggcacagagatg
atcaaagaaggacaagatattccgttcgaaacgttcttaggctttaaaggggataaagtc
cccgatatcgacctgaactttagtggtgaatatcaaccgaaagcacataactatacaaaa
gtcttgttcggtgaagaatatgtttatcgtgccggaacaattggtactgtcgctgaaaaa
acggcatttggtttcgtgaaagggtatttaaatgatcaaggcattcataaacgtggtgct
gaagtggatcgtctcgtgaaaggttgcacaggtgttaaacgtacaactggtcagcaccca
ggtgggattatcgtggttccagattatatggacatttttgactttacaccgattcaatat
ccagcagacgatcaaagttcaagttggatgacgacgcactttgacttccattcgattcat
gataacgttctgaaacttgatattctcgggcacgatgatccaacgatgattcggatgttg
caagacttgtcaggtatcgatccaaaaacgattcctgttgacgatcaacaaacgatgcgg
attttcagttctccagaagcgcttggtgtaacagaagaggaaattttagcgaaaaccgga
acgttcggtgtgccagaatttgggacaggtttcgtacgtcaaatgttagaagacacgaaa
ccgacgacattttcagagcttgtacaaatttcaggactgtcacatggtaccgatgtatgg
ttgggtaatgcacaagaactgattcgtagtggaacttgtacgttatcgagctgtatcggt
tgtcgtgacgatattatggtgtacttaatgtacgctggtttagaaccgtcactcgccttt
aaaattatggaagcagtacgtaaaggtaaaggcttaacagaggaatttgaacaagtgatg
aaagaaaataacgtgccagattggtatatggattcatgtaagaaaattaaatacatgttc
ccgaaagcgcacgcagcagcttatgtgctaatggctgtacgtatcgcttatttcaaagtg
catcatccactttattattatgcaagttactttactgtccgtgcgtcagactttgattta
attacgatggtgaaagacaaagacagtattcgtcaaactgtaaaagatatgtatgcacgt
tacatggatttaggtaaaaaagaaaaagatgtattgaccgtgctagaaattatgaatgaa
atggcgcatcgtggttaccggatgcaacctgtcaacttagagaaaagtcaggcatatgag
ttcattattgaaggtgatacattaattccgccattcgttgctgtgccgggtcttggtgaa
aacgtagcgaaacgtattgttgaagcgcgtgaagaaggaccgttcttatcgaaagaagat
ttgaacaaaaaagctggtgtgtcacaaaaaatcattgaatacctcgatagtttaggctca
ttaccgaatatgcctgacaaagcacagttgtccatctttgatatgtag
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