Seriola dumerili (greater amberjack): 111216427
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Entry
111216427 CDS
T05606
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03008
Ribosome biogenesis in eukaryotes
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111216427 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
111216427 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111216427 (xrn2)
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111216427 (xrn2)
03009 Ribosome biogenesis [BR:
sdu03009
]
111216427 (xrn2)
03016 Transfer RNA biogenesis [BR:
sdu03016
]
111216427 (xrn2)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111216427 (xrn2)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111216427 (xrn2)
Ribosome biogenesis [BR:
sdu03009
]
Eukaryotic type
Pre-60S particles
RNases
111216427 (xrn2)
Transfer RNA biogenesis [BR:
sdu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111216427 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
111216427
NCBI-ProteinID:
XP_022593673
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MGVPAFFRWLSRKYSSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKHRIREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAHCLRYYVAD
RLSNDPGWRNVTVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQIGHEIKDCQGTAREKQGQHDEFADSVPVSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTQNGYVNLERVEMIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KRKRMKAEQQGPAYLTTGQFAPQALGRRDRPEPVQNARHQAYDMRMQSREQHNKDAAQSL
KAMMRNGGNSSAGPSDSADNRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDV
SDDDFRKKVVRSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFTEFEKGT
KPFKPLEQLMGVFPAASGNFLPETWRNLMSNPVSSIIDFYPDDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALADVYPDLTPEEVKRNSLGSDVLFISKSHPLFDFVHELYRTESIEGTE
IPAELCHGIQGILNLDDDPILPDKSVTSPIPMLRDISQNISIGVKFKDPDYADGFVFKAV
LLPGAKIPNKVLKPGDWEKGNREPWRPQLGFNPNRQRAHLDQSGFRALGHSMNRNQHSGG
QYSNTPPPSNYQQGNYRPPHSGGHQPFQHSRQNSLLGAPPSFHQPQYPRQQQQQQQQQQQ
QYGGGGHGWDRAMQSQQSAYQQNMNRGRGGGAPGGYQQRYDQRRDDWHDRRDNRGQQHQG
YNSGRGYPPPPPSRRYNWN
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttttttcgttggcttagccgaaaatattcgtcaattattgtgcac
tgtgtggaagagaaggggaaagagtgtaatggagtccgtatccctgttgatacaaccaag
ccgaaccccaacgaggtggagtttgacaacttgtacctggacatgaatgggatcattcac
ccctgtacacatccagaagataaacctgctcccaaaaatgaagatgagatgatggtcgcc
atcttcgagtacatcgaccgcctgttcaatattgtgcggcccaggagagttctctacatg
gccatcgatggagtggctcctcgtgccaaaatgaaccagcagcgctctcgacggtttcgt
gcctccaaagaaggagtggagctgacggaggagaaacatcgcattagggaggagatcatc
cagagaggtggttatcttccacctgaggagattaaggagaggttcgacagcaactgcatc
actccaggaacagagttcatggacaacctggcgcattgtctccgttactacgtcgcagac
agactcagcaacgatccagggtggaggaatgtcaccgtcttcctgtctgatgcgagtgtt
ccaggtgaaggcgaacacaagatcatggacttcatcaggagacagagagctcagcccaac
cacgaccccaacacacaccactgcctgtgtggagccgacgctgacctgatcatgctcggc
ctggccacccacgagcccaacttcaccatcatcagagaggagttcaaacccaacaagccc
cgcccctgcgcgctctgcggacagataggtcacgagatcaaagactgccaggggacggcc
agagagaagcagggacagcacgatgaattcgcagactcggtgccggtgtctgagcaggag
ttcatattcatcagactctgtgtgctgcgcgagtacctggccagagagctgaccatggcc
agcctgccgtttcccttcgactttgagaggagtgtcgacgactgggtcttcatgtgcttc
ttcgttggtaacgacttcctacctcacctgccgtccctggaaatcagagagggagcgatc
gatcgactggtcaacatctacaaagacgttgtgcacaaaaccggaggctacctgacacag
aacggctacgtcaacctggagcgagtcgagatgatcatgcaggctgtgggcgtggctgag
gacaacatcttcaagaaacgcaaagaggacgatgaaggcttcaagcgaagaatgaaagag
aaacgaaagcggatgaaagcagagcagcagggccccgcctacctgaccacgggccagttc
gcccctcaggctctggggagaagagaccgaccggagcccgtccagaacgctcggcaccag
gcctacgacatgaggatgcagtcgagggagcagcacaacaaggacgctgctcagtctctg
aaggccatgatgaggaatggaggcaattcgtctgcaggtcccagcgacagtgcagacaac
aggggggtgaagaggaaagccgaggacagcgacagcgagccggagcccgaggacaacgtc
aggttgtgggaggagggctggaagcagagatactacaagaccaagtttgacgtggacgtg
agcgacgacgacttcaggaagaaggtggttcggtcgtacgtggagggtctctgctgggtg
ctgcgctattactaccagggctgtgcttcctggaaatggtacttcccgttccactacgcc
ccgttcgcctccgacttcaaagacatcaaagagatgttcaccgagttcgagaagggaacc
aaaccatttaagcccctggagcagctgatgggagtgtttcctgctgccagcggcaacttc
ctgcctgaaacatggcggaacctcatgagcaacccagtttcttccatcattgacttctac
cccgatgacttcgccattgatctcaacggcaagaagtacgcctggcaaggcgttgccctg
ctgccatttgtggatgaacgtcggctgagggcggctctggcggacgtctaccccgacctc
acacctgaggaagtgaagagaaacagcctgggaagcgacgtgctgtttatcagcaaatct
cacccgctcttcgactttgtccacgaactctaccgcacagagtctatcgagggcactgag
atccctgcagagctgtgccatggaatccaaggtatattaaatcttgatgacgaccctatt
ctaccagataagtcggtgacgtcgcccatcccaatgctgcgtgacatctcacagaacatt
tcgattggagtgaagttcaaggatcctgactatgcagatggctttgtgttcaaggcggtc
ctcctgcctggagccaagattcccaataaggtcctgaaaccaggtgactgggagaagggg
aacagggaaccgtggagaccccagctgggcttcaaccccaacaggcagcgggctcacctg
gaccagtccggcttcagggctctgggtcacagtatgaacaggaaccagcacagtggagga
cagtacagcaacactccaccaccaagcaactaccagcaaggaaactaccgtcctccacac
agcggcggccaccagcctttccaacattccaggcagaacagtttgctgggagcgcccccc
tccttccaccagccccagtatccaaggcagcagcagcagcagcagcagcagcagcagcag
cagtatggaggtgggggtcacggttgggatcgggccatgcagtcgcagcagtcagcgtac
cagcagaacatgaaccgcgggcggggaggaggggcgccgggcggctaccagcagcgctac
gatcaacgcagggacgactggcacgaccgcagggacaaccgggggcaacagcatcagggc
tacaactctggcagaggttacccccctcctcccccctccaggagatacaactggaactaa
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