Seriola dumerili (greater amberjack): 111216444
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Entry
111216444 CDS
T05606
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04140
Autophagy - animal
sdu04148
Efferocytosis
sdu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111216444 (vps18)
04148 Efferocytosis
111216444 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
111216444 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111216444 (vps18)
Membrane trafficking [BR:
sdu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111216444 (vps18)
Hops complex
111216444 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_11
zf-RING_16
zf_RING_Vps8
DUF1664
zf-RING_Vps41
zf-RING_UBOX
Apolipoprotein
zf-ANAPC11
DUF5600
zf-rbx1
zf-C3H2C3
DUF2175
LETM1_C
zf-RING_5
DUF4446
Sec8_N
Motif
Other DBs
NCBI-GeneID:
111216444
NCBI-ProteinID:
XP_022593695
UniProt:
A0A3B4U5E1
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSSQQHSRLSSTNIGLAHSGFVNVRLEEEKPIFNKQRIDFTPPER
INHLAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSKVHRLFLDPTGSHVLISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETSTGPILVGTSQGIIFEAEISA
NEGSLFNTNPDQYFRQVHSLEEDGKPVPVCCMEVERGLENKYFIISTTRKRLFQFVGKVA
EGSEQQGFSSIFNQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTPDIDLNLNKPISIVLTQFHFLLLLHDRVKAICTLNGQVVFE
DVFPDKFGPLKKMIKDPVGGLVWIYTERAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSERTQITLLVTWLAELYLNSLGQLESDGNNIIFQETRNEFRHFLSSPKHKECLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDNYCDALEVLSKHCDEKLFYK
FSPVLMQHIPRKVVDAWIQMGKKLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELN
VTEEAIHNYLLSLYAKYKPDSLLLYLEQAGTHASEIHYDLKYALRLCAEHGYLRACVLVY
RIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSAYKQSRLEE
LQKKLAATTQSSKSRHRPVPKDDGDTSSLGKGNAGTSREQMKSDIDDIIASECVYCGELM
IKSIDKPFIDPLKFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattcttgacgagtacgaggactcgcaaaacacgaggcaaagctcgcagcag
cacagccgcttgtcaagcaccaacatcgggttagcacattcaggctttgtgaatgtgaga
cttgaggaagagaagccgatattcaacaagcagaggatcgattttaccccgccggagagg
ataaaccatcttgcagtctgcaacaatcagctctgcatgagtctggggaaggacaccctg
ctgaggattgacttggccaagccagatcagcctaaccaaattgaattaggaagaaaagat
gacagtaaagtgcacagactgttcctagaccccacaggctctcatgtgctgatcagcctg
agcaccagtgagtgtctgtacctcaacaggaacacccagaaggtacgcagtctgtcccgc
tggagaggccacctcattgagagcgtgggctggaacaagctgctgggcaacgagaccagc
acaggacccatcctggttggcaccagtcaaggcatcatctttgaggctgagatctctgca
aatgagggcagcctgttcaacaccaatccagaccaatacttcaggcaggtccactccctg
gaggaggatgggaagccagtaccggtctgctgcatggaggtggagcgtggcctggagaac
aagtactttatcatctccaccacgcgtaaacgcctgttccagtttgtgggtaaagtggcc
gaggggtcagagcagcaaggcttcagctccatcttcaaccagaaccaggacctgctgccc
agtttccaggagttcccagctaacatgggctacagcgagatcaccttctacacctcaaag
ctgcggacctcccctaaggcatttgcctggatgatgggtaatggagttctttatggtcag
ctggactatgtcaggcctgattctctgctgagtgatgtgcaggtatgggagtacaccccg
gacatcgacctcaatctcaataagcccatctccattgtgctgacacagttccacttcctt
ttgttgctccatgacagagtgaaggccatctgcactctgaatggacaggtggtatttgag
gatgtgttccctgataaattcggccctctcaagaagatgatcaaggacccagttggtggt
ttggtgtggatctacaccgagcgggcagtgttccggtatcacatccagcgtgaggccagg
gacgtctggcagatgtacatgagtatgaataaatttgatctggctaaggagtactgccgt
gaccggcctgagtgcatggacatggtgctggccaaggaggctgaacactgcttccagaat
aagcgatacctggagagtgccaagtgctatgcgctgacacagaactactttgaggagata
gcactcaagttcatcgaagccaaacaagaggaagccctgaaggagttcttactgaagaaa
ctaaataatttgaaacagagtgagagaacgcagatcaccttgctggtcacatggctagca
gagctctacctgaacagccttggccagctggagagtgatggtaacaacatcatcttccag
gagacccgtaatgagttccgccacttcctcagcagccctaaacacaaggagtgcctgttc
aacaaccgcagcactatctacgacctgctggccagccacggaaatgtggacgacatggtt
tacttctcagttgtcatgcaggactatgagagagtgatatcccactactgtcaacatgat
aactactgcgatgctctggaggtgctctccaagcactgtgatgaaaagcttttttacaag
ttctcccccgtcctcatgcagcatattcccagaaaagtggtagatgcgtggattcagatg
ggcaagaagctggacccaaagaagctcatcccagctctgatgaactacagccagatgggc
agtactcagcagatcagtgaaaccatccgctacatggagttctgtgtgtacgagctcaat
gtgacagaggaggcaatccataactacctgctgtcactctatgctaagtataagccggac
tctctgctgttgtatctggagcaggcaggtacacacgcctcagagatacactatgacttg
aagtatgctctcaggttgtgtgctgaacatggctacctccgggcctgtgtcctggtttat
aggatcatggaactttatgaggaggcagtggatcttgcattacaagtagatgtagacttg
gctaagtcatgcgctgacctaccagaggatgatgaggaactgaggaaaaagctttggttg
aagattgcccggcatgtggttcaagaggagaaagatgtgaagaaagccatgaactgtctg
tccagctgcaacctgctcaagattgaagatatcctgcccttcttcccagactttgtcacc
attgaccactttaaggaggccatctgcagctccctggaggagtacaaccagcacattgag
gagctgaagcaggaaatggaggaggctacagaaagcgctaaacgcatcagagaagacatt
caagaaatgaggaacaaatatggtgtagtggattcccaagaaaagtgtgctgcttgcgac
tttccattgctcaacaggcccttctacctattcctgtgtggacacatgttccactatgac
tgcctgttccaggaggtgacccctcacctgtcggcctacaagcagagtcgcctggaggag
ctgcagaaaaagctggctgcaaccacgcaatcctccaagtcacgccaccgcccagtgccc
aaggatgatggagatacttccagcctgggaaagggcaatgcaggcacaagccgggagcag
atgaaatcagacattgatgacatcattgcatctgagtgcgtgtactgcggcgaactgatg
atcaaatccatcgacaagcctttcattgatccactgaaatttgaggaggagaaatccagc
tggctatga
DBGET
integrated database retrieval system
