Seriola dumerili (greater amberjack): 111216593
Help
Entry
111216593 CDS
T05606
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111216593 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111216593 (parn)
Enzymes [BR:
sdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111216593 (parn)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111216593 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
111216593
NCBI-ProteinID:
XP_022593879
UniProt:
A0A3B4UNQ9
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MEVTRKNYKDCLNTVYSAIEDADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQAKSKYITKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQDEEAQLREQTEERRNQHANGVGTPSYISPSSKGAANVPEEHKDF
INRVVEKVEALFTNSEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETIETEKKERYIQV
SKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPQVE
TDEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGKQQQQEKEKIGQTAKTWGEDGWVKAH
YTSSTTSGFGYSRALRKRSISPVQGEQGSGEPVITDGWSHYSYPDSTGSKKMKTDDTSGQ
ANAEAVESKTSEGWLKTGDASDSAGLSPVPDEEESPEGTDPADDADGTITWQQAPAVHGR
KGQKNKKKKSEAAESTTSLFEVPEVW
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaaaaaattataaagactgtttgaacacggtgtacagcgcgatagag
gatgccgacttccttgccatcgatggagaattttcagggataagcgacggccccaatgtc
agtgcactaaccaacgggcttgacacaccagaggagcgatacacgaagcttaaaaagcat
tccatggactttctactcttccagtttggattatgtacattcaaatacgaccaggcaaag
tcaaagtatatcacgaagccgtttaatttttatatattcccgaaaccattcaacaggact
tctcctgacattaagttcatctgccaaagttccagtattgactttctggccagtcaggga
tttgacttcaacaaggtgttctgtcacggaatcccgtacctaaatcaagacgaggaagcc
cagctgagggagcagacggaggagaggaggaatcagcatgctaacggtgtagggacacca
tcctacatctctccatcctccaaaggtgctgcaaatgtacccgaggagcataaagacttc
atcaacagggtggtagagaaagttgaggccctcttcaccaactcagagaagactttggac
ctggagccatgcactgggtttcagagaaagctgatataccagacactgaactggaagttt
cccaaagggcttcatgtggaaaccattgaaacagaaaagaaggagcgatacatccaggtg
agcaaagtggatgaagaggagaggaagaggagggagcagcagaaactggagagagagcag
gaggagctaaatgatgctgttggcttctccagggtgatccatgccatctctaaatctggc
aaactcgtggttggccacaacatgctgttggatgtgatgcacaccatccaccagttctac
tgcccacttccagaggacctccaagactttaaagaggtcacgatgtgcgtcttcccaaga
attctggacacaaagttaatggcttccactcagccgtttaaggagctgatcactaacacc
tctctggcagagctggagaaacagctgaaggagagccccttcaagtcaccacaagttgaa
acggacgaggggttccccagttacgacacagcccaggagcagctccatgaggcagggtac
gatgcctacatcactggcctctgtttcatctccatggccaactacctgggctctttcttg
actccacccaaagcttacatctcagctcgatccaaactcattgagcctttcttcaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatctgcaa
cccaaaagagaccacgtcctgtacgtcaccttcccaaaagaatggaagaccagtgacctc
taccagctctttagtgcctttgggaacatccaggtttcatggatagatgacacatcagca
tttgtgtccttaagtcaaacagaccaggtgcagatagctatgaacaccagccgctatgca
gagagctacaggatccagacgtatgcagagtacgtccagggcaagcagcagcaacaggag
aaggagaagatcggtcagaccgccaaaacctggggagaggacggctgggtgaaagctcac
tacacctcatccactaccagtggttttggatattccagggctttgagaaaacgcagcatc
agcccggttcagggagaacaggggagtggagaacctgtaattacagacggctggagtcac
tactcgtacccagatagcaccggcagcaagaaaatgaaaactgatgatacaagtggacag
gcaaatgctgaggctgtcgagagcaagacatcagaggggtggctaaagacgggagatgca
tcagattcagcagggttaagtccagtccctgatgaggaggaaagtcccgagggcacagat
ccagctgatgatgctgacgggacgatcacctggcaacaagccccggcagtccacgggagg
aaaggtcaaaagaacaagaaaaagaagtctgaagcggcggagtctacaacatcgctgttc
gaagtcccagaagtctggtag
DBGET
integrated database retrieval system
