Seriola dumerili (greater amberjack): 111216781
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Entry
111216781 CDS
T05606
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111216781 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
111216781 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111216781 (lsm4)
03041 Spliceosome [BR:
sdu03041
]
111216781 (lsm4)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111216781 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
111216781 (lsm4)
Spliceosome [BR:
sdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111216781 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TFIIA
EOS1
DUF7500
eIF-3_zeta
DUF2201_N
Motif
Other DBs
NCBI-GeneID:
111216781
NCBI-ProteinID:
XP_022594122
LinkDB
All DBs
Position
Unknown
AA seq
167 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGMTG
PGRGQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDKKPGKPQGMKNQH
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctgtctctgctgaagactgcccagaaccatcccatgctggtggagctgaag
aacggagagacatacaacggtcacctcgtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacttcgagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaagtatctgcgaatccccgacgagatcatcgacatggtgaag
gaggaggtggtgtcgaagggccgcggtcggggaggcgcccagcagaacaaacagcagggc
aaaggaagaggaggagccggcagaggtctgtttggcggtcgtggcagaggaatgaccggc
cctggtcgaggccagcagcagcagcagcagcagcagcagcagcagcaacaacaacagcag
cagcagcaacaacaacagcagcagcagcagcagcagcaggataagaaaccagggaaacca
cagggaatgaagaaccagcactga
DBGET
integrated database retrieval system
