Seriola dumerili (greater amberjack): 111216835
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Entry
111216835 CDS
T05606
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04136
Autophagy - other
sdu04140
Autophagy - animal
sdu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111216835 (atg16l1)
04136 Autophagy - other
111216835 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
111216835 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111216835 (atg16l1)
03029 Mitochondrial biogenesis [BR:
sdu03029
]
111216835 (atg16l1)
Membrane trafficking [BR:
sdu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
111216835 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
111216835 (atg16l1)
Mitochondrial biogenesis [BR:
sdu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
111216835 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
WD40_RFWD3
eIF2A
Tricorn_2nd
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_WDR41
Beta-prop_NWD2_C
Beta-prop_SPT8
PUMA_CC
Beta-prop_DCAF12
AP5B1_middle
HALZ
NET2A
HEF_HK
DUF1664
DUF2730
CC_Bre1
Motif
Other DBs
NCBI-GeneID:
111216835
NCBI-ProteinID:
XP_022594175
UniProt:
A0A3B4TLN6
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MAERRVECTWKRHISEQLKLRDQVQRQAFEEIIHQYNRLLEKSDLQTVLSERYQTDKYDV
QRGHEASSGADSNRSEALQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQQKDKE
IQSNEAKMLEYQQQITNLEGDCRELRNYLQDLERANQTLKDEYDALQITFSALEEKLRKT
TEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQAKLQKELADAAKEPLPIDPDDDIEVL
AEDGGKGGGETSPNRPLSRTPSKKISQPPPGGLLDSISNIFGVSECVQPGLLPPHSRRRT
ANSFSTSPENTEAPSGGCAEVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRVK
LWEVVAGHCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGH
SGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHF
DKKVRFWDIRAESIVRELELLGRVTSLDLNHDRTELLTCSRDDLIKIIDLRTNSIRQTFS
AQGFKCGADWTRVTFSPDGCYLAGGSADGALYIWNVLTGKVDKTLDRNHNSAINSVSWSP
SGAYVASVEKGSKAILWSDM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcgggtggagtgtacatggaagagacacatctcagagcagctgaagctc
agagaccaagtgcagagacaagccttcgaggagatcatccaccagtataaccgtctgctg
gagaagtcagacctgcagactgttctgtcagagagataccagactgacaaatatgacgtc
cagagaggacacgaagccagttcgggtgcagactcgaatcgcagcgaagctctgcagcag
gaaatggctcagatgagaattaaacaccaggaggagctgacagagctgcacaagaagaga
ggagagctggctcagagtgtgatcgaactgaacaaccagattcaacagaaagacaaagag
atccagagcaacgaggccaaaatgttggagtatcagcagcagatcaccaacctggaggga
gactgtcgggagctgaggaactacctgcaggacctggagagggcaaaccagacgctaaag
gatgagtatgatgccctgcagatcactttctctgctctggaggagaaactgaggaaaaca
acagaggacaaccaggagctggtgtctcgatggatggcagagaaagctcaggaggccaac
aggctgaacgctgagaacgagaaggacagcagacgcagacaggccaagttgcagaaggag
ctggctgatgctgccaaagagcctctgcccattgacccggacgacgacatcgaggttctg
gctgaggatggagggaaggggggaggagagacctcaccaaacagaccactcagcagaact
cccagtaagaaaatctcccagcctcctcctggtggtctgctcgactccatttccaacata
tttggagtgtctgagtgtgttcagcctggactcctcccaccacactccaggcgtcgaacc
gccaactctttcagcacttcacctgaaaacacagaggccccgtcaggagggtgtgcagag
gttcgagtcccgtccacagctctgcacgtgtttgaagcccatgacggtgaagtgaatgca
gtgaggttcagccctggctctcgtctcctggctacaggagggatggaccgcagggtgaag
ctgtgggaggttgttgcaggtcactgtgagcctaaaggagctctgaccggcagtaacgca
ggaatcaccagcattgagttcgacagcgctggttcgtacctgcttgctgcctctaatgac
tttgccagtcggatctggactgtggacgactacagactgaggcacactctgacaggtcac
agtgggaaggtgctgtcggctcgtttcctattggacaatgctcgaatcgtctctgggagc
tatgacagaacgctcaaactgtgggacctccgcagcaaagtctgtatgaagacggttttc
gctggttccagctgtaacgacatcgtctgtacggagcagtgcgtcatgagtggacacttt
gataagaaagttcgattctgggacatcagagcggagagcatagtgcgggagctggagctg
ctgggcagagtgacgtctctggacctgaaccacgaccgaaccgagctgctcacctgttcc
agagacgacctgatcaagatcattgacctgcgcaccaactctatcagacagacatttagt
gctcagggcttcaagtgtggagctgactggaccagagtgaccttcagcccggacggctgc
tacttggctggaggatcagctgatggagctctgtatatctggaacgtcctgacggggaaa
gtggacaaaactcttgaccggaaccacaactctgccatcaactcagtgtcctggtcccct
tcaggagcctacgtggccagtgtggagaagggcagcaaggccatcctgtggtccgacatg
tga
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