Seriola dumerili (greater amberjack): 111216873
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Entry
111216873 CDS
T05606
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04382
Cornified envelope formation
sdu04510
Focal adhesion
sdu04512
ECM-receptor interaction
sdu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111216873
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111216873
09142 Cell motility
04820 Cytoskeleton in muscle cells
111216873
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111216873
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdu04147
]
111216873
00536 Glycosaminoglycan binding proteins [BR:
sdu00536
]
111216873
Exosome [BR:
sdu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111216873
Glycosaminoglycan binding proteins [BR:
sdu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111216873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111216873
NCBI-ProteinID:
XP_022594234
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MLLTSCSAPCSYTWLWCLLMMLTAPPAALGGDHTEPCAGRDCSTCQCFPAKGARGAPGGL
GQQGHQGPPGFPGPQGPPGEKGQRGDEGPTGAAGLKGDLGSVGVLGFPGLEGVPGHPGPA
GGPGFPGLDGCNGTRGQRGDPGLPGEQGRDGELGFPGLKGFPGDPAVYFIQYPGVPGDVG
PPGLPGLQGEQGLPGSVGGVGSDGLDGTNGLPGLPGSRGPPGEKGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEKGHRGIKGVCGAEGLLGMDSLPGIKGEKGVPGFPGPRGF
SGIPGLLGEKGFKGIQGSPGLPGLIGREGPKGMMGDPGPKGLPQEVDVTHTGDVGGTGPQ
GLSGPEGDMGLMGMHGPPGAPGLSIPGPAGIVGQSGVPGSKGERGDPGQVYKDGPTPGEP
GKPGHPGLRGLKGEPGSPGRYCLPGAPGESGDLGQQGLTGDQGFPGFKGSNGACNCGPPF
ILRGPPGPVGDSGNQGFPGVPGAPGQRGEKGLPGDTGDTGEQGLGGFPGVKGLKGQKGDF
IVVDRLGEKGNIGQYGPPGRQGFSGRRGRDGLSGTPGNPGPQGDSFTSSPGDRGFPGFLG
PKGSSGPQGSPGADVGGAIGKRGPPGEPGAPGFLGPPGPKGTTGDTLPCVPRNPGPPGEK
GDTGNAGYTGLPGPSGFRGITGPDGIKGDKGQSGLPGLPGRQGPPGLVGDTGEEGSEGFS
YGGDPGSPGIPGYPGLRGPAGDSDVGPSGPIGFPGPLGSQGPKGVPGPPGIDGLQGVQGL
AGGPGAKGQRGQDGAPGITGPPGPSPGLCDIGKPGSKGPFGPQGPIGPPGFQGEKGETGE
VGPPGFGLQGPLGKPGSPGVPGYPGPQGPSGPIGDSGLPGPDGQKGLLGPQGTYGAQGAS
GQTGATGAPGWTGERGFNGRDGVQGCEGPKGEKGCKGPPGPPGDTMCVPIKGETGKPGPS
GIKGFPGPRGSKGVRGVTGKPGCPGSNGPPGIVGRPGLPGSCGMSGSPGPPGRQGPPGLI
GFPGPTGDQGDPGCPGKSGEPGHQGCTGQKGDKGDSVGSPGLPGNRGPPGDFGPTGPPGP
RGDPGRPGFLGPPGQKGCKGDPGHHGDPGSPGVTGPSGPGGRPGCPGLPGKAGADGPPGA
QGCPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVQGPPGLQGLPGDKGPPGPSGPSGPS
QPGQPGPNGPPGPKGPPGSFGPPGKRGPNCQNPVSGPGGDPGCSGPDGEPGCVGDMGDPG
PNPPVLGDEGDNGDSGCRGQIGSKGSLGPKGLPGNPGDCGVKGMKGSQGLMGLPGNQGPR
GCTGQRGPPGPKGLDGPVGPKGERGGVSPCPTYPPPQPGPPGPPGPPGRLGEAGLQGENG
LKGFKGMRGNPGSEGPIGFVGPPGRDGNQGEPGLQGEQGVDGAKGDAGPVGDRGSPGISK
NLNSGFLLVRHSQSKNIPTCPLNMRPLWNGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGACSYASRNDKSYWLSTTAAVPSIPVGGPSIEDHISRCVVCEAPSAPVALHSQ
TADQPDCPPKWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVDTSTSTSNKPSTTLTEAWQQRGNIGRCNVCMRK
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagttacacctggctctggtgcctcctgatg
atgctgacagctcctccagcagctctcgggggtgaccacacagaaccgtgcgctgggcgg
gactgctccacctgccagtgttttccagccaaaggagcaaggggtgctccaggtggtctg
gggcagcagggccatcaggggcccccaggattcccaggtcctcaggggcctccaggagaa
aagggccaaagaggagatgaggggccaacaggagctgcaggactgaaaggagacctgggc
agtgtcggtgttcttggttttccgggtttagagggagtcccgggacacccgggccctgct
ggaggtccaggttttccaggtctggacggatgtaatgggaccagagggcagagaggagat
cctggacttcccggagaacaaggacgtgatggagaactgggttttccaggactgaaagga
tttccaggagatccagcagtgtacttcattcagtaccctggagtacctggagatgtgggg
ccccctggtcttcctggactgcagggtgagcagggtctccctggttcagtaggaggtgtg
ggttcagacggactggatgggaccaacggtctccctggtcttcctggttccaggggtcca
cctggagaaaaaggtcgatctctccctggacagaaaggagacgagggggatcagggcctc
caggggcccccggggccgtttgagtacgtcgaccctccagaggacctgtacatcaaagga
gaaaagggccatcgagggattaaaggagtctgtggagctgagggactgcttggcatggac
tctctcccaggaatcaaaggagagaaaggggttcctgggttccctgggcccagaggattt
tctggcatccccggtctgctcggagagaaaggattcaaggggattcaaggaagtccaggt
ctcccaggtctgattggacgagaaggtcctaagggcatgatgggagatccaggtcctaaa
ggcctccctcaggaggtagatgttacacacacaggtgatgttggaggcaccgggccccag
ggactgagcggccctgaaggagacatggggctgatgggaatgcatggtccccctggagcc
cctggcctctccatacctggtccagcaggtattgtaggtcagagtggagttccaggatcc
aaaggggagagaggagatccaggtcaggtctataaagatggacccacacctggagaacct
ggaaaaccaggacatcccggacttagaggattgaaaggagaaccaggaagtccaggtcgt
tactgtcttcccggggccccaggagaatcaggagacttgggtcaacagggactcacaggg
gatcagggattcccagggtttaaaggctctaatggtgcctgcaattgtggccctcctttc
atactaaggggcccccccggccctgtgggtgactcgggaaatcaggggtttccaggagtc
ccaggggccccagggcagagaggagagaaaggtttacctggagatactggagatactgga
gaacagggtctgggtggatttccaggcgtcaaagggttaaagggtcagaagggagatttc
attgtggtggatagattaggtgagaaaggaaacattggccagtacggccccccaggcaga
caaggattctctgggagaagaggacgtgatggactctctggcacccctggtaaccctggt
ccccagggtgacagttttaccagctctcctggagacagaggcttcccagggtttttaggg
ccaaagggatcatcaggacctcaaggctctccaggagcagatgtaggtggagcaatagga
aagcgtgggccccctggggagccgggagctccaggattcctgggtcccccagggccaaaa
gggactactggtgacactctgccctgtgtacccagaaaccccggccccccgggggagaag
ggagacactgggaacgcaggttacacaggactcccaggtccttcaggttttcgtggcatc
actggacctgatggaattaaaggagacaaaggacagtctggacttcctggactacctgga
cgacaaggacctccaggacttgttggagatactggagaagaaggatctgaaggcttcagt
tacggaggagatccaggctctccagggattccaggctatcctgggctcaggggcccagca
ggagactctgatgtcggaccctcaggacccattggcttcccaggaccactgggctctcag
ggacctaaaggagttcctggtccccccggcatagatggactacaaggagtccagggtctg
gccgggggccctggagcaaagggccagagagggcaggatggagccccaggtatcactggt
cccccaggtccttcacctggcctttgtgacataggaaaacccggttccaagggccccttt
ggccctcagggacccattggacccccaggttttcagggagagaaaggtgagactggggag
gtgggtcctccaggctttggccttcaaggccctttagggaaaccaggttctccaggtgtc
ccaggatacccggggccccagggcccctctggccccattggagactctggactgccagga
cccgacggtcagaaaggtctgttgggaccccaaggcacgtatggagcgcaaggggcttca
ggacagactggggccactggagctccaggatggacaggagagagagggttcaatggacga
gatggagttcaaggatgtgaagggccaaaaggagagaagggatgtaaagggcccccaggg
cctccaggagataccatgtgtgtcccaatcaaaggagagacaggaaaaccaggaccttcc
ggaatcaaaggtttccctggaccacgaggaagtaaaggtgtgcgaggcgttactggtaag
ccagggtgtccaggcagcaatggccccccaggtattgttggacgcccaggactgccaggt
tcctgcggtatgtcaggatcccctggaccacctggacgtcaaggacctccaggactcatt
ggcttccctggaccaactggagatcagggtgacccaggatgtccagggaaatctggagag
cctggtcaccaaggatgtacgggacagaaaggtgataaaggagactctgttggttctcct
ggcctacctggaaacagggggcctcctggagactttggccccacaggacctcctggacct
cgaggagatcccggaagacctggtttcctcgggcctccgggacagaaaggatgcaaagga
gatccaggccaccatggagacccaggttcaccaggtgtgaccggtccttcaggtcccgga
ggtcgtccaggttgtccaggtcttcctggtaaagcaggtgctgatggtcctccaggagcg
cagggctgcccgggactccaaggtcctcctggaccactgggacttcatggactggatgga
ctgaaaggagtgaaaggggacatggggaccagaggtctgggtgtgcagggtcctccgggt
ctccaaggtcttccaggggataagggtcctccaggtccttcaggtccctctggtccatcc
cagcctggacaaccaggacccaacggccccccaggacccaaaggacctccaggtagtttt
ggacctccaggtaaacgtggacccaactgtcaaaatccagtctcaggcccaggtggagat
cctggttgttctggaccagatggagagccaggttgtgttggggacatgggggatccaggt
cctaaccctccagtacttggggatgaaggggacaatggggactcaggatgccggggtcaa
attggctcaaagggatctctgggacccaaaggactgccaggcaaccctggagactgtgga
gtgaaaggtatgaaggggtcacaaggtctgatgggactacctggtaatcagggccctaga
ggttgtactggtcagagagggcctccaggaccaaaaggacttgatggaccagtgggtcca
aagggagaaagaggcggagtctccccgtgccctacttaccctcccccacagcctggtccc
ccgggcccccctggcccccctggtagacttggagaggctggcctccagggagaaaatggc
ctgaagggattcaaaggtatgagggggaatcctggatctgagggaccaataggctttgtg
gggcccccaggtcgagacggaaaccaaggagagccaggcctgcagggggagcaaggagta
gatggagccaaaggtgatgctggtccagtcggtgaccgcggttctcctggaatatccaaa
aacttgaactcgggcttcctgttggttaggcacagccaatcaaagaacattcccacctgt
ccattaaacatgaggcccctgtggaacggatacagtctgctctacttggagggccaggag
aaggctcacactcaggaccttggtcaagcggggtcgtgtatgcgagtcttttccaccatg
ccattctcctcctgtaacatgggagcctgctcttacgccagtcgtaatgataaatcctat
tggttgtcgacaacggcagccgtacccagcatacctgtgggcggaccctccattgaagat
cacatcagccgctgtgtagtgtgtgaagccccctccgcacctgtcgcactgcacagccag
accgccgaccagccagactgcccccccaagtggacgagcttgtggaccggatactccttc
ctcatgcatacaggtgccggtgatgagggcggcggccagtctctgacatcatcaggtagc
tgtctgacagacttcagggcccagcccttcgtggagtgtcaggggcctcgtggaacctgc
cactactttgccaacatctacagcttctggttaaccagagtggacacgagcacctccact
tccaacaagccctccaccacgctgaccgaggcctggcagcagagggggaacatcgggagg
tgcaacgtctgcatgaggaagtga
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integrated database retrieval system
