Seriola dumerili (greater amberjack): 111216921
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Entry
111216921 CDS
T05606
Name
(RefSeq) hypoxia-inducible factor 3-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04137
Mitophagy - animal
sdu04140
Autophagy - animal
sdu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111216921
04137 Mitophagy - animal
111216921
04148 Efferocytosis
111216921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdu03000
]
111216921
Transcription factors [BR:
sdu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
111216921
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
111216921
NCBI-ProteinID:
XP_022594296
LinkDB
All DBs
Position
Unknown
AA seq
677 aa
AA seq
DB search
MEKKEETVAVRRSSSEQRKLRSRDAARCRRSQETEVFYELAHTLPLPRRVSTHLDKAAIM
RVTLSFLRMRHLLASGENQKEESEEEEEEEEEEEEDPMDAFYPQALAGFIMVMSEEGDMI
YLTENVSRHIGITQLELLGQSVYDFVHPCDQEELRDLLAPRPGLSKKSSTEQRSERNFFL
RMKSTLTSRGRTVNIKSATWKVLHCTGHMCPFGGSSTSPPAARVMTLLCEPIPHPSSVEF
PLDTCTFLTRHSMDLRFTHCEGRVTELVGYKPDDLIGRSAYEFHHALDSDHVNKSLHTLL
SKGQVSTSHYRFLANSGGFVWAETQATVLYSSKTSQPEAVVCLNFILSAVEQPDIVFSVE
QTRCGQLHKSEPPSPQLPPEDCETAAACDSDGEQLANSSQTEDAGSSPSSTANLFFKLKE
PEELLHLAPEAGDAVVPLTGGFVELSFISPPSPNSLPDHPQDLCTPQLRQLLTPIFNPIT
PPSSSSPASSPDPEPSIREEEEEMDTSKLEKFFAIRPEEGQKTGETLENMEGMDLDMLAP
YISMDDDFQLTFLSSLPEEADKASSSSPEPSAVSRKRTHNPDEELPSQLMVQDKRQKQDP
SSIEEELLLSHRLLDCLEETNQSDLILDPGPGGRSQLLTDRDPILGGIQGLCDTAALMRD
IFVSRPPDLSPPLSPMT
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaaagaggagactgtcgcggtcagacgaagcagttcggagcagaggaagctg
cgttctcgtgatgccgccagatgtaggcggagtcaggagacagaggtgttttatgagctt
gcccacactctgccactcccccgccgagtgtccacccacctggacaaagctgccatcatg
agagtcaccctcagcttcctgcgcatgcgccacctcctggcatctggtgagaatcagaaa
gaggagtctgaagaggaggaagaggaggaggaggaagaggaggaggatccaatggatgct
ttctatcctcaggcgttggctgggttcatcatggtgatgagcgaggaaggagacatgatc
tacctgacggagaacgtcagcagacacatcggcatcacacagctggagctactgggtcag
agtgtctatgactttgttcatccctgtgaccaggaggagctcagagacctgctggctcca
cgtccaggtctgagtaagaagtcatcgacagagcagcggagcgagaggaacttcttcctg
cgaatgaaaagcacactgaccagcagggggcgcacagtcaacatcaagtctgctacctgg
aaggttctccactgtacaggtcacatgtgtccctttggtggcagctccacgtcgccccct
gcagccagagtgatgaccctgctgtgtgagcccatccctcacccgtccagcgtggagttc
cctctggacacctgcaccttcctcacccgccacagcatggacctgcgcttcacacactgc
gagggcagggttacagagttggtgggatacaaaccagacgatctgattggtcgctcagcc
tacgagttccatcatgcgctcgactctgatcacgtcaacaaaagcctgcacacattgctg
tccaaaggtcaggtgagcaccagtcactaccgtttcctggcaaacagcggcggctttgtc
tgggcagagacccaggcgaccgtcctctacagcagcaagacgtcgcagcccgaggccgtc
gtctgcctcaacttcatactgagcgcagtggagcagccagacattgttttctctgtcgag
cagacccgctgtggccagctgcataaatctgaacctccatcaccacagcttccaccagag
gactgtgagactgctgctgcctgcgactctgacggtgagcagcttgccaactccagtcag
actgaggacgcaggttcaagtcccagcagcactgcaaatctcttcttcaaactgaaggag
ccagaggagcttctccacttggctcctgaggctggagacgctgtcgtaccactgacagga
ggttttgttgagctgtctttcatcagtccgcccagtccaaactcactgccggaccaccct
caggatctgtgcactccacagctgcgacagctcctcacgcccatcttcaaccccatcacg
ccaccttcctcatcatcaccagcctcctcacctgatcctgagccgagcatccgtgaggaa
gaggaggagatggacacaagcaagttggagaagttctttgccattaggccagaagagggt
cagaagacaggagaaacactggagaacatggaggggatggatctagacatgttggctcct
tacatctctatggatgatgacttccagctgaccttcctcagcagtctgccggaggaagcc
gacaaagcttcgtcctcctcccctgaaccttcagctgtgagcaggaagcggacccataac
ccagacgaggagctgccgtctcagctgatggtgcaggacaagaggcagaaacaagatcct
tcctctatagaagaggaacttcttctcagccacagattactggactgtctggaggaaacc
aaccagtcagatctgatcttagacccgggcccaggggggcggagtcagctactcacagac
agagaccctattttaggaggcatacagggactctgtgatactgcagctctcatgagggac
atattcgtatcccgtccacctgacctgtcgccgcctctctcgcccatgacttga
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