Seriola dumerili (greater amberjack): 111216922
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Entry
111216922 CDS
T05606
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04010
MAPK signaling pathway
sdu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
111216922
04020 Calcium signaling pathway
111216922
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sdu04040
]
111216922
Ion channels [BR:
sdu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
111216922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
111216922
NCBI-ProteinID:
XP_022594298
LinkDB
All DBs
Position
Unknown
AA seq
1327 aa
AA seq
DB search
MYNPCEERGFNMHVSVSPHSLVLLDLFSFVYFSMELVIKVAALGLSGYNGSYLSNNWNKF
DVFIYFGEVLDYLLVSQGIKIQVRHALRLMRLVGRVPSMQDMVMILLDTVPMLVNVLVLY
IFVMFIFAIVGVQLWAGKLRNRCFLGVDIPENSSGSLNPYYVSKYDEESPFICSYDHSNG
MRRCHDVPPYIRDEETCSLAVPNHSSAANKFLVPGAAANACVNWNLYYNICRAGDHNPNM
GVTSFDNIGHALIVLFQVVTLEGWTDILFFVMDAHSFWSFIFFMLVTIMSSFIIMNVCAI
VIATQFSESMTRQKREQRANPVVQLCLQFLRWLWTIACSCIRRRNRVQPVCSRSETGGIL
KHTWEPLRRKLLRLINSKLFDRVIMLAVFFSILAMAIEHHGQPKQVAEMLRISNNIFTLV
FVVELIVKLLALKWAYFKDQNNIFDFAIVVISLWETFAKADGRLSVLRAFRMLRFVRLLH
FLPYLKRQLLVLKATMKEAALLCQLLLFVTIIFSVIGMCLFGGKFTFETQSGSTIKDRMN
FDSLLWSMVTVFQILTEEDWNLVLYNAVAATSQWTFFYFFAIIVVGKHVLLNVLMGVVVQ
SFQAIHSSDSDDEDSISSTSSSQTSESESSLSENHETNGSSRPDEDCPLPPCGSGSPTVI
SSAPTDTNDHDMSLSWIRRVLRWCRQHEDWSFFLFSPQNRFRIFCQRVISHPIFDYVILL
FILLSCVTLAIERPGINPTSRERQILKLSNYVFSAVFLVEMLFKIVALGLVYGKDSYCRS
SWNDVDGLLVILSFVDIIVSLASRSKNKSLGFLKVLRLLRTLRPLRVIKRAPKLKLAVEA
LMASVKPIGNIVLICCAFFFFYGILGVQLFKGKFFHCLGEDITNITSKTDCLSADYRWVR
KTYNFDNLPQALMALFVMYSKDGWVNIMYDGLDAVGVDRQPVRNNNKWMLLFFITFMIMS
FLLLDMFIGVMVETFHQCQQEQKRRDQEEEGGRARPEQVRGKEKELVEQAPYYTSYSPIR
QFIHSVCVSNGLDLIMNLTIVLSVIFMALEHYGQSLYIENLIERSYYVLTAFLIIEVLLK
LVAFGVWRFITNRWNLLDIIVVFVSIISIILRMKMMNTVPINPSILRVTRALRLAQVLKL
LKAKKIRVLLTTIIKTLSQVGNICLLFMFFFFIYAVLGVELFGSLECSDDHPCLGLHRYF
NFKHFGLALLTLYQVCTGDNWSGILKDTLRECSPGSVSCLATCPGSLRSSYHLRVMVQFV
LVNLVVAAIMQALEDSTMEEERGEGHAARRAGPLSPEEGVGSEGHVDRSDTEPAPPSPAQ
SQIRSSS
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacccctgcgaggagaggggcttcaacatgcatgtcagtgtgagcccccactct
cttgtactactggatcttttcagttttgtctacttctcaatggaactggtcatcaaggtg
gcagccctgggactctctggctacaacggaagttaccttagcaacaactggaacaagttt
gatgtcttcatctactttggagaggtgctggattatcttctggtttcccaaggtatcaag
atacaggtccgtcatgcgctcaggctgatgcgactcgtaggcagagtcccaagtatgcaa
gatatggtgatgatactcttggacaccgtgccgatgcttgtgaacgttctcgtcctgtac
atctttgtcatgttcatctttgccattgtgggagttcagctgtgggcggggaaactgcgc
aaccgctgcttccttggagtcgacatcccagaaaactccagcgggtcgttaaatccatac
tatgtgtccaagtatgatgaggagagcccgttcatttgttcgtatgaccacagcaacggg
atgcgccgctgccatgacgtgccgccttacatccgggatgaggaaacctgttcgttggct
gttcccaaccacagttcagctgcaaacaagttcttagtccctggggccgcggctaacgcc
tgtgtgaactggaacttatactataacatctgtcgcgccggggaccacaaccccaacatg
ggagtcaccagtttcgataacatcggccacgccttgatcgtcttattccaggttgtcaca
ctggaaggttggacagacatcttgttttttgtcatggatgctcattccttctggagcttc
atcttcttcatgctcgtcaccattatgagctccttcatcattatgaacgtgtgcgcgatc
gtcatcgccacgcagttctctgagagcatgacgcggcagaagagagagcagcgagccaac
cctgtcgtgcagctgtgtctccagttcctccgctggctgtggaccatcgcctgcagctgc
atcagacgtcgtaacagggtgcagcccgtatgcagcaggagtgagaccggtggcatactg
aaacatacctgggagccattgaggagaaaacttctgaggttgatcaacagcaaactcttt
gaccgggtgatcatgttagccgtcttcttcagtattctcgccatggccatagaacaccat
gggcagcctaagcaggtggcagagatgctgcggatcagtaacaacatcttcactctcgtg
tttgttgtggagctgatcgtaaagctgcttgccctcaagtgggcctacttcaaggaccaa
aacaacatttttgattttgccatcgttgtcatcagcttgtgggagacatttgccaaagct
gatggcaggttgtccgtcctgcgtgcgtttcgtatgctgcggtttgtgcggctgcttcac
ttcctgccttacctgaagagacagctgctcgtgctgaaggcgaccatgaaggaggcagcc
ctgctctgccagctgctgctgtttgtcaccatcattttcagtgtgataggcatgtgcctg
tttggtggcaaatttaccttcgagacccagagcggaagcaccatcaaggaccggatgaat
tttgactccctactgtggtccatggtcactgtgtttcagatcctgactgaggaggactgg
aatctggtgctgtacaatgccgtggctgccacctcccagtggaccttcttctactttttc
gccatcatcgtggtcggaaaacacgttctcctcaacgttctcatgggcgtagttgtccag
agcttccaggccatacactcctcagattcagatgacgaagactccatcagctccacttca
tccagccagacttctgagagcgagtcttcactgagtgaaaaccacgagacaaatggttcc
tctagacccgatgaagactgccctctccctccatgtggatccggcagccccactgtgatc
agctctgcacctacagataccaatgaccatgacatgtctttgagctggatccggagagtg
ctgcgctggtgcagacagcatgaggactggtccttcttcctgttttctccacagaacagg
ttccgtatcttctgccaacgcgtgatctctcacccgatattcgactatgtgatcctgctc
ttcattttactgagctgcgtcactcttgctatagagaggcctggaatcaacccgacgagc
agggagcgacagatcctgaaattgtccaattacgttttctctgccgtcttcctggtcgag
atgcttttcaagattgtagctctgggtttggtgtatgggaaggacagctactgccggtcc
tcctggaacgatgtggacggtttattggtgattctgtcttttgtcgacatcatcgtctct
ctggccagcaggagcaaaaacaaaagtctgggcttcctcaaagttttacgtctgctgcga
acgctccgccccctgagggtgatcaagcgagccccgaaactgaagctggctgtggaggct
ctgatggcctcggtcaaacccatcggaaacatcgttctcatttgctgcgccttcttcttt
ttctacggcatccttggggtgcagctgttcaaagggaagttcttccactgtctgggcgag
gacatcacaaacatcaccagcaagactgactgtctgtcggccgactaccgatgggtgcga
aagacgtacaactttgacaacctgcctcaggctctgatggccttgtttgtaatgtactca
aaggacggctgggtcaacatcatgtatgatgggctggatgctgtgggagtagaccgacag
cctgtgaggaacaacaacaagtggatgctgttgttcttcatcaccttcatgataatgagc
ttccttctcctcgacatgttcatcggcgtgatggtggagaccttccaccagtgtcagcag
gagcaaaaaagacgggatcaagaggaggagggaggaagggcacggccagaacaagtcagg
ggtaaggagaaagagttagttgagcaggcgccatattacaccagctactcccccatccgt
cagttcatccacagtgtgtgtgtcagcaacggcctggatctcatcatgaacctcacaatc
gtcctcagtgtcatcttcatggctttggaacattatggtcaatctctgtacatagagaat
ctgatagagaggtcctactacgtgttaactgccttcctgatcattgaagtcctgttgaag
cttgtggcctttggcgtgtggagattcataactaacaggtggaatctgttggacatcatt
gtggtcttcgtctctatcatcagcatcattctcaggatgaaaatgatgaacacagttcct
atcaatcccagcatccttagagtcactagagcactaagacttgcacaagttctgaagttg
ctaaaggccaagaagatccgagtcctcctgacaaccatcatcaaaacgctgtcacaggtt
ggaaatatctgcctgctctttatgttcttctttttcatctacgccgttttgggagtggag
ctctttggcagcctagaatgcagcgacgatcacccgtgcctgggtttacatcggtacttc
aacttcaagcactttggactggccctgctcacactctaccaggtgtgcaccggagacaac
tggagcgggattttgaaagacaccttgagagagtgttcgcccggcagcgtttcctgcttg
gctacctgtcctgggtctctccgctcttcttaccaccttcgggtcatggtccagtttgtg
ctggtgaacctggtggtggcggctatcatgcaggctctggaggacagcaccatggaggag
gaacgaggagaaggccatgctgcacgcagagcgggcccactgtctccagaggagggcgtc
ggctccgagggccacgtagatagatctgacacggagccggcccctccgtctccggcacag
tcccagatcagatccagctct
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