Seriola dumerili (greater amberjack): 111217109
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Entry
111217109 CDS
T05606
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03030
DNA replication
sdu03420
Nucleotide excision repair
sdu03430
Mismatch repair
sdu03440
Homologous recombination
sdu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111217109
03420 Nucleotide excision repair
111217109
03430 Mismatch repair
111217109
03440 Homologous recombination
111217109
03460 Fanconi anemia pathway
111217109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdu03000
]
111217109
03032 DNA replication proteins [BR:
sdu03032
]
111217109
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111217109
Transcription factors [BR:
sdu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111217109
DNA replication proteins [BR:
sdu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111217109
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111217109
MMR (mismatch excision repair)
111217109
DSBR (double strand breaks repair)
HR (homologous recombination)
111217109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
CATSPERD-E_C
IBR
Motif
Other DBs
NCBI-GeneID:
111217109
NCBI-ProteinID:
XP_022594548
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MSVTLTEGAVEALLKGSHMNNPVLQMLSMRQISNTTGPTRFRLMMSDGQHYWSSFLLATQ
LNKLAEENLLLPNCVCMLTKTITNTLADGRHVVVVMGMDILQSAEETGGKIGNPTPFNTD
EKSSSPQKFASSTSASPSPSSAAVPGPSYVNNSTAPCPPRGRGSGFVGKSPMQASPMKAS
PSKFSPMQASPMKASPSKFSPMQASPMKASPSKFSPMKASPSKFSPMKASPSKFSPMKAS
SSSSPGSSTKVIPIATLNPYQSKWTIRARVTNKSKVRTWSNSKGEGKLFSFDIVDESGEI
KITAFNKEVDKFFSLVEQGKVYYISKATLKVANKQYTTLKNDYEMTLHAHSSIVPCDDSQ
DVPTVHCDFVPIAELENRDKDSIIDVIGVCKSVEDVSRITTKTSREVSKRALNLIDTTGK
VVTVTLWGEEAEKFDGSGQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAW
YDRTGYALHSQSLTETRSVGSGAKMNWKTLSDVKNEHMGQGEKADYFSCVATVLYIRKEN
CLYQACPSADCNKKVIDQQNGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWVTCFQET
AEVLLGHSAETLGELRDTDETAFDEVFQRTNFTEHIFKNRVKLETYNDESRVKVTVMEVQ
PIDHREYSRRLLSNIRKLAS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttacactcacagagggggcggttgaagccctgctcaaaggctcacacatgaac
aatcccgtgctgcagatgctgagcatgcgtcaaatcagtaacaccacaggcccaaccagg
ttccggcttatgatgagtgacggtcagcactattggtcttccttcctgttggccacccag
ttaaacaaactggcagaagagaacctcctgttaccaaactgtgtgtgtatgctgaccaag
accatcaccaacacattggcagatggcaggcatgtggtggttgtgatgggcatggacata
ttgcaatcagctgaggaaactggagggaagatagggaatcccactccgtttaatacagat
gaaaagtcgtcatctccgcagaagtttgcctcaagcacctctgcctcaccaagcccttca
tcagctgcagtacctggaccctcctatgtcaacaacagcacagccccttgtcctccccga
ggccgtggaagtggttttgtgggaaagtcgcccatgcaggcttcacccatgaaggcttca
ccctcaaagttttcacccatgcaggcttcacccatgaaggcctcaccctcaaagttttca
cccatgcaggcttcacccatgaaggcttcaccctcaaagttttcacccatgaaggcctca
ccctcaaagttttcacccatgaaggcttcaccctcaaagttttcacccatgaaggcttca
tccagctcatctccaggttcttcaactaaagtgattccgattgctaccctcaacccctac
caaagcaagtggactatcagagcccgagtcaccaacaagtccaaagtccgcacctggagt
aactcaaaaggagagggcaagctcttctcctttgacatagtggatgagagtggagaaatc
aagatcacagccttcaacaaggaggtggacaagtttttctctctagtggagcaaggcaag
gtgtactacatctccaaggctacactgaaggtggccaacaaacagtacaccacgctgaag
aacgactacgagatgaccctccatgctcattcatccattgtaccatgtgatgacagtcag
gacgtccccacggtgcactgtgactttgtgcccatcgcagagctggagaacagagacaag
gactccatcattgatgtcattggagtgtgtaagagtgtggaggatgtatcccgtatcacc
actaagaccagcagagaagtctccaagagggccctcaacctaatagacacaactggcaaa
gtggtgacagtcacactgtggggagaggaggcagagaagtttgacggctcagggcagcct
gtggtcgccatcaaaggagctcgcttgtctgattttgggggcagatctctctctgctttg
ttcagctcaacagtcatggtcaacccagacataccggaggcctttagattgagggcctgg
tatgaccggacaggctatgcgctccatagccagtccctgacagagacgaggtccgtgggc
agcggagcaaagatgaactggaaaacactgagcgacgtgaagaatgaacacatgggacaa
ggagagaaggcagactatttcagctgcgtggcgacggtgctgtacattcgtaaggagaat
tgtctgtaccaggcctgtccatctgcagactgcaacaagaaggtcatagaccaacagaac
ggactgtaccgctgcgaaaagtgtaaccgagagttccccaactttaaatatagactccta
ctttctgccaacttagcagacttcggggataaccagtgggtgacatgcttccaggagaca
gctgaggtcctgttgggtcacagtgcagaaacactgggggagctaagagacacagacgag
actgcatttgatgaagtcttccagagaactaacttcacagagcacatctttaaaaacaga
gtcaagctggagacgtacaatgatgaaagtcgagtgaaggtaacggtaatggaagttcaa
ccaatcgaccacagggaatacagcaggagactcctcagtaacatccgaaaattggccagc
tga
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