Seriola dumerili (greater amberjack): 111217376
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Entry
111217376 CDS
T05606
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03015
mRNA surveillance pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111217376
09123 Folding, sorting and degradation
03018 RNA degradation
111217376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111217376
03041 Spliceosome [BR:
sdu03041
]
111217376
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111217376
mRNA cycle factors
Stress granule specific factors
111217376
Spliceosome [BR:
sdu03041
]
Complex C
Other components
Complex C specific factors
111217376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RBD_DEAH11
RRM_5
RRM_occluded
RRM_3
RRM_RdRP1_2
RBD_RDR6
YflT
Motif
Other DBs
NCBI-GeneID:
111217376
NCBI-ProteinID:
XP_022594932
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDDSIDNKALYDTFS
AFGNILSCKVVCDDKGSRGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERE
VEFGTKAMKFTNVYIKNFGEDYSDEKLKEVFSAFGRTLSVRVMRDERGHSRGFGFVNYAN
HEDAQKAVDEMNGKEINGKIIYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDSIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIIAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMTSPIIDSYQQAGYYMTVPQPPTRSFYNH
NAVSNMRPAPRWTGQPPRPQGPYSTQFIGNSVPRRGSTAIATVRQASTQAPHIVSSTHKT
NNIGTQTVGGRTDMPGVTRSSQYKYSSAVRNPQHVVTVPAPLTRLQVIPAPVMEPPVHIQ
GPEPLTASMLAAAPLMDQKQLLGERLYPMIHAHHPNLAGKITGMLLEIDNSELLHMLESP
ESLHSKVDEAIAVLQAHQAKECSPKK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggaccagcatatcccctcgcctctttgtatgtaggggacctgcaccct
gatgttacagaggccatgctctatcagaaattttctcctgctggacccatcatgtcaatt
cgtgtgtgccgagacatcatcacccgcagatctcttggatatgcctacataaacttccag
caaccagctgatgcggagtgtgccctggatacaatgaactatgacgttatcaagggacgg
ccaatccgaataatgtggtctcagcgtgacccaggactcaggaagtctggtgtgggtaac
atcttcatcaagaacatggatgattctattgacaacaaggcactgtacgataccttctca
gccttcggcaatattttgtcctgcaaggttgtttgtgatgacaaaggatccagaggatat
ggctttgttcactttgagactcaggaggcagcaaaccgggccattgaaaccatgaatggc
atgctgctgaatgacaggaaagtttttgttggccactttaagtctcgcaaggaaagagag
gtggagtttggcaccaaagctatgaagttcaccaacgtctacatcaagaactttggtgaa
gactacagtgatgagaaactcaaggaagtcttttctgcatttgggaggactctcagtgtg
cgggtgatgagggacgagagggggcattcacgaggatttggctttgtaaactatgctaac
catgaggatgctcagaaggcagttgatgaaatgaatggaaaggagatcaatgggaaaatc
atctacgtcggacgggctcagaaacgtctggaacgccagggagagctcaaacgcaagttt
gaccagatcaaacaagaccgcatccagcgctatcagggggtgaatctctatgtgaagaac
ttggatgatagcatagatgatgagagactccggaaggagtttgctccttatggcaccatc
accagtgccaaggtgatgacagacggctctcaaagcaagggctttggctttgtctgtttc
tcttcacctgaggaagcaacaaaagcagtaacggaaatgaacgggagaattattgcaacc
aagccgctgtatgtggctctggctcagcggagggaggagcgtaaagcaatccttactaac
aagtacatgcagagacttgctaccctgaggaccatgacaagtccgatcatcgactcgtac
cagcaggccggatactacatgactgtaccgcagcctcccactcgctccttctacaaccac
aatgctgtcagcaacatgaggccagcacctcgttggacaggacagcctccgagaccacag
ggcccctactcaacccagtttattggtaattctgttccccgacgtggatcgacagcaatt
gctacagttagacaggcttccacccaggctccacatattgtcagctctacacacaagaca
aataacattgggacccagactgtaggaggacgtacagacatgcctggtgtgaccagaagc
agccagtataagtactcgtctgcagtgaggaaccctcagcacgtcgttactgtacctgca
cccttgacaagactacaggttattcctgcaccagtgatggagccaccagtgcacattcaa
ggcccagagccgctcactgcctcgatgctggctgcagctccactcatggaccagaaacag
cttcttggtgagcgattgtacccaatgatccatgcccatcacccaaacttggctggaaaa
atcactgggatgctcctggagattgacaactcagagctgctgcacatgctggagtcgccc
gagtctctgcactccaaggtggacgaggcgattgctgtcctgcaggcccatcaggcgaag
gaatgctctcctaagaagtga
DBGET
integrated database retrieval system
