Seriola dumerili (greater amberjack): 111217481
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Entry
111217481 CDS
T05606
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111217481 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111217481 (ddx42)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111217481 (ddx42)
Spliceosome [BR:
sdu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111217481 (ddx42)
Complex B
111217481 (ddx42)
Complex C
U2 SnRNP specific factors
111217481 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
111217481
NCBI-ProteinID:
XP_022595092
UniProt:
A0A3B4VJX8
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MNWSKGGPGVKRGFGFGGFSLAGKKEEPQLPQKSHTSFGATGSGAGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDY
DSDGNPIAAATKKIIMPLPPIDHSEIDYSPFEKNFYNEHEELSNLTGTQVLELRQKLNLR
VSGAAPPKPCTSFAHFSFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDVTQVVELLPSGT
DKWAWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSIGLLHGDMDQSERNKVIS
DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTTFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRE
RPGLGAESSDRTSSSSSSSSSLLSSTCSYEGYSKPATGAMGDRMSAMKQAFQAQYKSHFV
AASSGPPKLSTKSNSSSGWTSAGSLSSVPTEAANGSERSHSATLSMSSFTSAGSLSSVPT
SQTSSQHSYPPPAPPSQRDSSRDRHGDDRGRHGDSYHRHSDRSDRHSGEDRYSERDRHGD
RDRDRHGERDRYSSSRHGDSRNGDGSRRDRDDRRSDRDGGDRGSGEGRDRGDDSFAVPEP
PKRRKSRWDN
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaaaggtggtccaggtgtgaagcgagggtttgggtttggaggattttct
cttgcaggaaaaaaagaggaacctcaacttcctcaaaaatcccacacatcattcggcgcc
accggatcaggtgcgggatatgggaagaaccagcagctcccatcgttctacaaaattggg
acaaaaagggctaactttgatgaggaaaatgcgtattttgaagatgatgaagaggagtcc
agcagcaatgtggatctgccatacattcctgcagagaattcacccacacggcagcagatg
cagtctggtggcggctcagacagtgaggatgacccactggatgccttcatggcggaggtt
gagaaccaagcagctaaggatatgaggaaactagaggaaaaggaaaaggagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctac
atggcagagaatcccacagccggcctgactcaggaggaagaggaggagaacattgactat
gacagtgacgggaacccaatcgccgctgccaccaagaaaatcatcatgccgcttcctcct
atcgaccactctgagattgattactcaccctttgagaaaaacttctacaatgagcacgag
gagctcagcaacctgactggaactcaagtgttggagttaaggcagaaactgaacttgcgg
gtatctggtgctgcccctccaaaaccttgtaccagctttgcccacttcagctttgatgag
cagctaatgcatcaaatccgcaagtctgagtacactcaacccacacctattcagtgccag
ggtgtgcctatagctctgtccggacgtgacatgattgggattgcaaaaactggcagtggc
aaaactgcagcttttatctggccaatgcttgttcatatcatggaccaaaaggagttggag
gcaggagaggggcccatcgcagttatcgtgtgtcccaccagagagctttgtcagcagatc
catgcggaatgtaagcgctttgggaaagcctactcattgcgttctgtggcagtttatgga
ggaggcagcatgtgggagcaggccaaggctctgcaggagggggcagagatcgtggtgtgc
actccgggtcgtctgattgaccatgtgaaaaagaaggccacgtccctgcagagagtgaca
tacctggtgtttgatgaggcagatcgcatgtttgatatgggctttgaatatcaggttaga
tctatcgctagccatgtccgcccagacagacagactcttctgttcagtgccacttttcga
aagaagatagagaggctggccagagacatcttgatagaccctatccgtgtggtgcaggga
gacattggagaggccaatgaggatgtgacccaggtcgtggagttgctgcccagtgggacg
gataaatgggcctggctgacccggcggctggtcgagttcacctcttctggctctgtcctc
atcttcgtcaccaagaaggcaaattgtgaagaactggccactaatctgacgcaggagggc
tacagcattgggctcctgcatggagatatggaccagagtgagaggaacaaggtcattagt
gactttaagaagaagaatttgcccgttctggttgctactgatgtagctgctcgtggtctg
gacatcccgtccattcgcacagtggtgaactacgacgtggcacgagacattgacacacac
actcacaggatcggtcgaaccggccgtgctggagagaagggcgtagcttacactctgctc
accaacaaagacactacattcgctggagaccttgtgagaaatctggaaggagctaatcaa
tctgtttctaaagaactgatggatttggccatgcagaatccatggtttaggaaatccaga
ttcaagggtggtaaaggaaagaagctgaatattggtggaggtggtctgggttaccgcgag
agaccaggcctgggggctgaaagttctgatcgcaccagcagcagcagcagcagcagcagc
agcttgttgtcttccacttgtagctatgagggctacagcaaaccagctactggggcgatg
ggagaccgcatgtccgcaatgaaacaagccttccaggctcagtataagagccactttgtg
gccgcatccagcggccctcctaagctcagcaccaagtctaacagctcgtcaggctggacg
agtgccggcagtctgagctcagtgccgacagaggctgccaatggctcagagaggtcccac
tctgccaccttgtcaatgtccagcttcaccagcgccggctccctgagctcagtgcccacc
agtcaaaccagttcacagcacagctaccctccgcctgcacctccctcacagagagacagc
tcacgggacagacatggcgatgaccgggggaggcatggggacagttaccaccgccacagt
gacaggagcgaccggcacagcggtgaggaccgctacagtgaacgagatcgccatggagac
agggaccgcgaccgccacggggaacgggatcgctacagcagcagccgccacggcgacagt
cgcaatggagatggaagcaggagggacagagatgatcgaaggagtgacagggatggggga
gacagggggagtggggaggggagggacagaggagatgatagctttgctgttcctgaacca
ccaaaacgtagaaagagcaggtgggacaactaa
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integrated database retrieval system
