Seriola dumerili (greater amberjack): 111218151
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Entry
111218151 CDS
T05606
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111218151 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111218151 (prpf40a)
Spliceosome [BR:
sdu03041
]
Complex A
U1 snRNP components
U1 related factors
111218151 (prpf40a)
Complex B
111218151 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
111218151
NCBI-ProteinID:
XP_022596007
UniProt:
A0A3B4V261
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTATTT
NGSPQEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGSTEAAAPGTTTAPAVQADNTATM
ATVMEAETATAVSEEHLSQAAVHHTPEVKTADAPVTSSESSAATEATASVEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKAKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRERDGKREKDLDKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccaccgcatttcccaccc
atgggtatgccacctatgggacagcgacctcccagcatgactccaatgcctcctggtata
attccccctggtataatgccaccaatgggcgcaccaccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggtgttgactccacagctgctgcacctggaacagctactaccaca
aatggctctccacaggaagaacagccaaagaagaagtccctgtggactgaacacaaatca
ctggatgggaagacctattattacaacacagagaccaagcagtccacctgggagaaaccg
gatgaactcaaatctcctgcagaacaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaggatctggaagctatgatcaaagcagaggaaaatggatcgacagag
gcagcggcccctggcaccaccacggctcctgcagtgcaagcagataatacagccactatg
gcgaccgtaatggaggcggaaactgcaaccgcagtctcagaggaacacctgtcccaggcg
gccgtgcatcacacacctgaggtcaagactgcagatgcacctgtgacatcctcagagagc
tcagctgccacagaggccacagccagtgttgaagtaacaaaggaagaacgaccagaactt
cagaagaagacgtacaagtggaacacaaaagaggaggccaagcaggccttcaaagagctg
ctgaaggagaagggtgtgtcctcaaactcctcttgggaacaggctatgaaaatgattatc
aatgatccacgctacagtgcgcttcccaaactgagtgagaagaagcaggcgtttaatgcc
tacaaagtccagacagagaaggaagaaaaggaggaggcaagaattaaatacaaggagtcc
aaagagacctttcagaggttcttggagaaccacgagaagatgacatctaccaccagatac
aagaaagcagaacagatgtttggtgagcttgaggtgtggagttgcgttccagagagagac
aggctggagatctatgaagatgtgttgttctacctcgctaagaaagagaaggagcaagct
aagcagctgagaaagaggaactgggaagctctaaagaacattctggacaacatggccaat
gtcacctaccgcaccacctggtctgaggcccagcagtacctgctagacaaccccaccttt
gcagaagatgaggagctgcagaatatggacaaggaggatgccctgatttgttttgaggag
cacatccgggcgctggagaaggaggaggaggaagagaaacagaaaactcttctcagggag
aggaggcgacagcgcaaaaacagagaggctttccagaaatttctcgatgagctccatgac
cacggccagcttcactccatgtctgcctggatggagatgtacccaaccctgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctggatctcttcaaattc
tatgtggaagacttgaaggctcgctaccatgatgaaaaaaggatcatcaaagatattctt
aaagacaaaggcttcctggttgaagttaacaccagctttgatgactttggatcagtcatc
agctcagacaagagagccaccacactggatgcaggaaacataaagctggccttcaacagt
ttacttgagaaggctgaagccagagagagggagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagccttcaagaacatgctgaaacaggccacaccaccgctggagcca
gaggctacatgggagggagtaagagagagattcttaaaagaatctgcctttgaagacgtg
actctggagtcggagaggaagaggattttcaaagacttcatgcatgtcttagagcatgaa
tgtcaacatcaccattcaaaggcaaagaagcactcaaagaagtccaagaagcaccacagg
aaacgttcccgctctcgatcaggctcagagtctgaggatgaggaatatcataagaagaaa
aagaggtcacagtccaaatccccctcggaacgctcctccagtggagaatctgagagaagc
tataagaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcatca
ccagattctgacaatgagaagaaaggaagagagcgtgatgggaagcgtgaaaaagacctt
gacaaagataaagagaacgacaagtctcgggggaaatctcgctccgactctaaacagaag
tctcctaaaaggaaagcggccaaagaggagggtggctgggatacatcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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