Seriola dumerili (greater amberjack): 111219132
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Entry
111219132 CDS
T05606
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111219132 (ddx20)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111219132 (ddx20)
Spliceosome [BR:
sdu03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
111219132 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
111219132
NCBI-ProteinID:
XP_022597447
UniProt:
A0A3B4UUR3
LinkDB
All DBs
Position
Unknown
AA seq
793 aa
AA seq
DB search
MASSVRRAAHDIETRKRTDDVLLSDGIDFGSLLLSPAVLDGLSAAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKPHLKKCHVAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPANKQMLALSATYPESLAKHLTRYMREPTFVRLNPSDMGLKG
LKQYYKLVQSHPLPHRVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLTQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLSLSALPSTIEPGLMDEPCDWDVCI
EASTPSSLSKLVSRSEKKKKPAAAAAAASITDQAVEHSGPTKPEKTHPTPRRGAHVEGNA
RTVSPTQTVQTRKQLQDALPKIPPLSSFKNCRSRFMTFEEAEQDFQSFITTGLGRTVEVI
REFRGREDDSPSNQNGHRESVTLNDDGAQNLTRSREQWKANFSPPRSVSSSSSSQLDTEE
KQQDNETVGSSNHTRGRECRAVMQSQTDARNTPTVPGPKSNPKAYPTSAPKIYHQTTGAS
NWRALSQPESYDPTRGTDSNRETNQAAPPQTGRNESRKMKEEIRKRSKKCSEKMDRERKR
DRNEGEQDEEGEEEEEECSAEIYWRACYRAWNDYYASMSPFQEQGYQSYYSVAHNWMAAY
RMNAVYMEELLKH
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccgtgaggagagcagcccacgacatagaaacgcgaaagcggaccgatgat
gtccttctgtcggatgggatcgacttcgggtccctgctgctgtctccggccgtgctggac
ggactgtccgccgcaggctttcagaagccctccccgatccagctcaaggccatcccgcta
ggccgctgcggacttgatttgattgtacaggccaagtctggcacgggaaagacatgtgtg
ttctgcaccatcgccctggactctctggtcctggagaatcctgcgactcaggttcttgtg
ttggctcctacacgtgagatagcagtgcagatccactcagtagtgatggccataggctgt
gccatggaaggcctggagtgccatgtttttattgggggcaggcctgtgagtcaggacaaa
ccccacctgaagaagtgccatgtagctgtgggctcacctggtcgtatcaagcagcttatc
gagctgggcatgttgtcgaccgccagcatcagactgtttgttctggatgaggcagacaag
ctgctggaggagggcagcttccaggagcagatcaactggatcttctcctctctacctgca
aacaagcagatgcttgcgctctctgccacctacccagaatcccttgcgaagcaccttacc
cgctacatgagagagcctacctttgttagactcaatcccagtgacatgggccttaaaggt
ctgaagcagtattacaagctggtgcagtcccatccgttacctcacagggttttcgaggag
aaggtgcagcacttactagagctgttcagtaaaatcccattcaaccaggccctggtgttc
tccaacctacacacaagggctcaacacctggcagacatcctgtcctccaaaggcttacct
gctgtttgtatctcaggtggtctgactcaggaccagaggctggaggcgatgtcaaaactg
aagcagtaccagtgcagggtgctcatctccactgacttgacttccagaggtatagatgca
gagaaagtcaacttggtgataaacctggacgtgccgcaggactgggaaacctacatgcac
agaatcggacgggcaggacgcttcggcactcaggggctggctgtgacctactgttgccat
ggtgaggaggagaacaagatgatggccattgctcaaaagtgcggcttgagtttatccgca
ttgccatccaccatagagcctgggttgatggacgagccatgtgactgggatgtctgcatt
gaggcctccactccaagctccttatcaaagcttgtctccaggtcagagaagaagaagaaa
cctgctgctgctgctgccgccgcctccatcacagaccaagctgtagagcatagtggacca
acaaagccagagaaaacccatccaacacccaggcgtggagcacatgttgaagggaatgct
agaactgtatctcctactcagacggtgcagactcgaaagcagctgcaagatgctctaccg
aagatccctcctctcagctcgttcaagaattgcaggtcaaggtttatgacctttgaggag
gctgagcaggacttccagagcttcattaccacagggttggggagaacagtggaggtcatc
agagagttcagaggtcgagaggacgatagccccagtaatcagaacgggcatagagagtct
gtcacacttaatgacgacggagctcaaaatttaacacggagtagagaacagtggaaagct
aacttttcacctccaaggtcagtttctagttcttcaagctcccaattggacacggaggag
aagcagcaggataatgagacagtgggaagttcaaatcacaccagaggaagagaatgcaga
gcagtgatgcaatctcagactgatgctagaaacacaccaactgtgcccggaccaaaatca
aatcccaaagcttatcctacttctgcgcccaaaatatatcaccagacaactggtgcatca
aattggagagctttgtctcagcctgagagctatgatccgacgcgtggtacagattcaaac
agggaaaccaatcaggccgctccgccacagactggcagaaatgaatcaagaaagatgaaa
gaagagattaggaaacggagcaaaaagtgctcagaaaagatggatagagagagaaagagg
gacaggaacgaaggagaacaagatgaagaaggagaggaggaggaggaggagtgcagcgct
gaaatttactggagagcctgctacagagcctggaatgattactacgcctccatgtctcct
tttcaagaacaaggctaccaaagctactacagcgtagctcacaactggatggcagcttat
cgtatgaatgctgtctacatggaagaactcctgaaacactga
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