Seriola dumerili (greater amberjack): 111219718 Help Entry 111219718         CDS       T05606                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06236   collagen type I alpha Organism sdu  Seriola dumerili (greater amberjack) Pathway sdu04510   Focal adhesion sdu04512   ECM-receptor interaction sdu04518   Integrin signaling sdu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sdu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     111219718    04518 Integrin signaling     111219718  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     111219718   09142 Cell motility    04820 Cytoskeleton in muscle cells     111219718  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sdu00536]     111219718 Glycosaminoglycan binding proteins [BR:sdu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    111219718 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd TILa Motif Other DBs NCBI-GeneID:  111219718 NCBI-ProteinID:  XP_022598172 LinkDB All DBs Position Unknown AA seq 1450 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDSTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT VMCDEVICEDTSDCADPIIPDGECCPICPDTDGPQVPGEVEPVTGDVGPKGDRGPVGPPG NDGIPGQPGLPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGPPVPGPMGPMGPRGPPGPPG SSGPQGFTGPPGEPGEPGASGAMGSRGPSGPPGKNGDDGEPGKPGRPGERGAAGPQGARG FPGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEAGASGENGVPGSMGARGLPGERGRPG PPGPSGARGNDGNTGPAGPPGPTGSAGPPGFPGGAGAKGETGPQGGRGSEGPQGARGEPG NPGPAGPAGAAGAPGSDGSPGAKGSPGAAGIAGAPGFPGARGPAGAQGAVGAPGPKGNNG DVGTPGPKGEPGSKGEPGPAGVQGLPGPSGEEGKRGARGEPGVAGPRGPSGERGAPGARG FPGADGAAGGKGAPGERGAPGAIGAQGATGESGSPGAPGAPGSKGMTGSPGSPGPDGKSG PAGSPGQDGRPGPAGSTGARGQPGVMGFPGPKGAAGDGGKPGERGPAGATGAVGAPGKDG DVGAPGPSGPGGPAGEKGEQGPAGPPGFQGLPGPQGATGETGKPGEQGGPGEAGPHGPSG PRGDRGFPGERGATGITGPTGARGAPGPAGSDGPKGEPGAAGAPGGIGAPGMQGMPGERG ASGLPGVKGERGDGGSKGVDGAPGKDGVRGMTGAIGVPGPPGAQGEKGEGGPLGVSGPTG PRGSPGERGETGPPGPAGFAGPPGADGQPGAKGETGDSGPKGDAGAPGPAGPLGAAGPQG PAGPPGSKGARGGAGPPGATGFPGPAGRVGPPGPAGAGGPPGPIGPIGKDGARGARGETG PAGRPGEAGGVGAPGIAGEKGSPGSDGAPGSPGTSGPQGVAGQRGIVGLPGQRGERGFPG LPGPSGEPGKQGPSGLVGERGMPGPAGPPGLSGATGEAGREGSPGHDGAPGRDGATGPKG DRGESGMAGPPGAPGAPGAPGAVGPSGKTGDRGESGPAGPAGPAGPAGVRGPAGPSGAKG DRGEAGEAGERGHKGHRGFTGMQGLPGPAGTAGERGPAGASGPAGPRGPAGSNGSPGKDG MNGLPGPIGPPGPRGRNGEMGPAGPPGPPGPAGPPGPPGGGFDFVSQPIQEKAPDPFRGG HYRADDPNMMRDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHPEWKSGAY WVDPNQGSPLDAIKVHCNMETGETCIYPSESSIPMKNWYLSKNIREKKHVWFSESMTGGF QFQYGSDGADSEDVSIQMTFMRLMSNQASQNITYHCKNSIAYMDSATGNLKKALLLQGSN DVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEF GVEVGPVCFL NT seq 4353 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatatccggttagcgcttttgctcagcgcaacggtgcttttggcg agaggtcaaggcgaggatgatagcacattcggcagctgcacattagacggacagttgtac aacgacaaggatgtatggaaaccagagccctgccagatctgcgtctgtgacagtggaacc gtcatgtgcgacgaggtgatctgtgaggacacatccgactgcgccgatcccatcattccc gacggagagtgctgccctatctgccccgataccgatggaccccaggttcctggagaggtt gagccagtaactggagacgttggccccaagggagacaggggtcccgttggtcctcctggc aatgatggaatccccggacagcctggtcttcccggcccacccggcccccctggcccccct ggccttggcggaaacttctctcctcaaatgagctatgttgaccactccaaatcctccggc ccacctgtccctggccccatgggtcctatgggtcctcgtggtcctcctggaccccctggc tcctctggtcctcagggtttcactggaccccctggagagcctggtgagcccggagcctct ggtgccatgggttctcgtggtccttctggcccccctggaaagaacggagatgatggtgag cctggcaaacctggacgccccggtgagcgcggagctgctggccctcagggtgctcgtgga ttccccggaacccctggactccccggcatcaagggacacagaggtttcagcggtctggat ggagctaagggagacgcaggacctgctggccctaagggagaggccggtgcctctggtgag aacggtgtccctggatccatgggtgctcgtggtctccctggtgagagaggccgccctgga cctcctggcccctctggtgctcgtggtaatgatggcaacactggtcccgctggtcctccc ggacctactggatctgctggtccccccggattccccggtggtgctggagctaagggagag actggtcctcagggaggccgtggatctgagggaccccagggagcccgtggtgagcccggt aacccaggacctgctggacctgctggagctgctggtgcccctggatctgatggttcccct ggtgctaagggttctcctggtgctgctggtattgctggtgctcctggtttccctggtgct cgtggtcctgctggagctcagggagctgttggtgctcctggtcccaagggtaacaatggt gatgttggcactcctggtcccaagggagagcctggttccaagggagagcctggccccgct ggagttcagggacttcctggcccctctggtgaggagggaaagagaggagctcgcggagag cccggtgttgctggaccccgtggacccagtggagagcgtggtgcccctggtgctcgtggt ttccctggtgctgatggagctgctggtggcaagggagcccctggtgagcgtggtgccccc ggcgcaattggagctcagggagcaactggtgagtctggaagccctggtgctcccggtgcc cctggatccaagggtatgactggtagccctggaagccctggccctgatggcaaatctgga cctgctggttcacctggacaagatggccgccctggacctgctggctccactggagccaga ggccagcccggagttatgggattccctggacccaagggagccgctggtgatggtggtaag cctggtgagagaggacctgctggtgctactggcgctgttggtgcccctggcaaagatggt gacgttggtgctcctggaccttctggccctggtggacctgctggagagaagggagagcag ggacctgctggtcctcccggattccagggtcttcctggaccccaaggtgctactggtgag actggcaagcctggtgagcagggaggtcctggtgaggctggaccccatggcccatctgga ccaagaggcgacagaggtttccccggtgagcgcggtgctaccggtatcactggccccact ggagcccgtggtgcccccggccctgctggtagcgatggacctaagggagagcccggtgct gctggtgcccccggcggtattggagcccccggtatgcagggaatgcccggcgagcgcgga gcttctggtcttcctggtgtcaagggagagagaggtgatggtggttccaagggagttgat ggtgcccctggtaaagatggcgtgcgtggtatgactggtgctattggagtccctggaccc cctggtgctcagggtgagaagggtgagggtggcccccttggagtctctggacccactggt cctcgtggttcccctggtgagcgtggagagactggacctcccggacctgccggattcgct ggacctcctggtgctgatggtcagcctggtgccaagggagagactggagacagcggaccc aagggagatgctggtgctcctggacctgccggacctcttggagctgccggtcctcaggga cctgctggtcctcctggaagcaaaggtgctcgtggtggtgctggacctcctggtgctact ggtttccctggacctgctggcagagttggaccccctggccctgctggagctggcggaccc cctggacccatcggacccattggcaaagatggagcaagaggagctcgtggtgagactggt cctgctggtcgccctggtgaggctggcggtgttggagccccaggaatcgctggagagaag ggatctcctggttctgatggagcccctggttcccctggtacttctggaccccaaggtgtt gctggacagcgtggtattgtaggtctccccggacagcgtggagagcgcggtttccctggt cttcctggaccatctggtgagcctggaaagcagggaccttctggacttgttggtgagcgt ggaatgcccggacctgctggaccccctggactgtctggtgccaccggagaggctggtcgt gagggatctcccggtcatgatggtgcccctggtcgtgacggagctactggccccaaggga gaccgtggtgagagcggcatggctggaccccctggagcccctggtgctcctggagccccc ggagctgttggcccctctggaaagactggtgaccgtggagagagtggtcccgctggtccc gccggtcctgctggtcccgctggtgtccgtggtcctgctggcccttctggtgccaaggga gacagaggagaggctggtgaggctggagagagaggccacaagggacacagaggattcact ggcatgcagggtctgcccggacccgctggaactgctggagagagaggacctgctggtgcc tctggacccgctggacctagaggacctgctggatctaatggttcccctggtaaggatggc atgaacggtctgcccggacccatcggaccccctggacctcgcggtcgcaatggagagatg ggacctgctggtcctcccggacctcctggacctgccggaccccctggacctcctggcggt ggattcgacttcgtcagccagccaatccaggagaaggcccccgatcccttccgtggcggc cactaccgcgctgacgaccccaacatgatgcgcgatcgcgacatggaggttgacaccacc ctcaagaccctgacccagaaggtcgagaagatccgtagccccgacggtacccagaagagc cctgcccgcatgtgccgtgacctgaggatgtgccaccctgagtggaagagcggcgcttac tgggttgaccccaaccagggctctcctctggatgccatcaaggtccactgcaacatggag actggcgagacttgcatctaccccagcgagtccagcatccccatgaagaactggtacctc agcaagaacatcagagagaagaagcacgtctggttcagcgagtccatgaccggtggattc cagttccagtatggcagcgatggagccgattccgaggatgtcagcatccagatgaccttc atgcgcctgatgtccaaccaggcctctcagaacatcacataccactgcaagaacagcatt gcctacatggactccgccactggcaacctgaagaaggctctgcttctccagggctccaac gacgtcgagatcagagccgagggcaacagccgcttcacatacagcgtcagcgaggatggc tgcacgtcacacactggcacatggggcaagacagtcatcgactacaagacatcaaaaaca tctcgcctgcccatcattgacattgctcctatggatgttggtgcccctgatcaggaattt ggcgtcgaagttggccccgtttgcttcttgtaa

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