Seriola dumerili (greater amberjack): 111220446
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Entry
111220446 CDS
T05606
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdu03009
]
111220446 (ddx21)
03036 Chromosome and associated proteins [BR:
sdu03036
]
111220446 (ddx21)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111220446 (ddx21)
Ribosome biogenesis [BR:
sdu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111220446 (ddx21)
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111220446 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111220446
NCBI-ProteinID:
XP_022599262
UniProt:
A0A3B4VGE8
LinkDB
All DBs
Position
Unknown
AA seq
756 aa
AA seq
DB search
MPSKIIFDTEDQAMDEDVNTVAEAKTLKKNKTKEGKKLKKKKELEDQEEQEDPGCEPPAP
KKKKKKDKLSADQVNGHLDEATDMNGNSDGVETPKQKTKKNTEGDTEKKKKKQKKSIAEA
ATNGHSTSNTPVQTPIQTPSQSSEESASDSEKETEETPEQREGAFSNFRISEGTIGKLKA
RGVSYLFDIQVKTFNIVYDGEDVIAQARTGTGKTFSFAIPLVEKLQDALTPTRGRAPKVL
VLAPTRELAIQVAKDFKDISKRLAIACFYGGSSYHPQIDAIRNGIDILIGTPGRVKDHLQ
NNKLDLSKVKHVVLDEVDQMLDMGFAEQVEEILASSYNRECDANPQTMLFSATCPSWVYD
VAKKYMRPECKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIVF
CETKKDANELSMNASIKQSAQSLHGDIPQKQRELTLKGFRNGSFEVLVATNVAARGLDIP
EVDLVIQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVG
VPTANDIIKSSSKDAVRFLDSVPVTAIGYFRASAEKLIEERGAVDALAAALAHISGATSL
EQRSLLNSDAGCTTMQLVCSQEMHNLGYAWRTIKEQLGEQIENHIQRMTFLKGKTGVCFD
VPVDKVKEMQENWKDGRRWQLTVATELPELEEKQFSNRGDRGFGGGNRSDRGGGFRGGRG
RNFGGNGGRGNGFRNGGGGYSNRGGHKRSFSQAFDY
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaatcatctttgacactgaagaccaagccatggatgaagatgtaaacact
gtcgccgaggctaaaaccctgaagaagaacaagaccaaggagggcaagaagttgaagaag
aagaaggagttggaggaccaggaagaacaggaggacccaggctgtgaacctccagcacct
aagaagaaaaagaaaaaagacaagctgagcgcggatcaagtgaacggccacttagatgag
gccacagacatgaatggcaacagtgatggtgttgaaacaccaaagcagaagactaagaag
aacactgaaggagacacagagaaaaaaaaaaagaagcaaaagaaatcaattgcagaggca
gcaaccaacggacattccacctcaaacacccctgttcagacgcccatccagacaccttca
cagtcaagtgaagagtcagccagtgacagtgaaaaagaaacggaagagacaccagagcag
agggaaggggccttctccaacttcaggatctctgagggcaccatcggtaaactgaaagct
cggggagtctcttacctgtttgacattcaggtgaagacatttaatattgtatacgatgga
gaagatgtaattgcccaagcccgaacaggaacaggaaaaactttctcctttgccatccct
ttggttgagaagcttcaggatgcattgactccgaccagaggccgggctcccaaggttctg
gtgttggcaccaaccagagagttagctatccaggtcgctaaggacttcaaagacatttcc
aagagactggctatcgcctgtttctatggaggtagctcataccacccacagattgatgct
atccgtaatggtattgatattttgattggaacccctggtcgtgtcaaagaccacctccag
aacaataaactcgacctctcaaaagtgaaacatgttgtcctggacgaagtggaccaaatg
ctggacatgggatttgcagagcaggttgaagaaattttggcttcatcatataatagagag
tgtgacgccaaccctcagactatgctgttttcggctacttgcccctcttgggtctacgat
gtggccaagaaatacatgagaccagaatgcaaacatgttgacctgattggcaagaaaaca
cagaaagctgcaacaactgttgaacatctggccatagcatgccactggtcacagcgtgca
gccgtgataggtgatgtgatccaagtttacagcggcagccatggcagaaccattgtgttc
tgtgagacaaagaaagatgccaacgaactttccatgaatgcatccatcaaacagagtgcc
cagtccctccatggggatattcctcagaaacagagagagttgacactgaagggcttcagg
aatggttcctttgaggttcttgttgccaccaacgttgcagcccgtggattagatatccct
gaagtcgatctggtgatccagtgttctccacccaaggatgtggaatcatacatccatcgc
tcaggacgtacaggccgagcaggcaggactggagtctgcatctgtttctaccagaggaaa
gaagaggaccagctgcgctacgtagaaaacaaagcaggtatcacattcagacgagttggc
gttcccaccgccaatgatatcatcaagtcatcaagcaaggatgctgtcaggtttctggac
tctgttccggtcacagctatcggttacttcagagcatcagctgagaagctaattgaggag
agaggagctgttgatgcactagctgctgcactggcccatatttctggagccacaagtcta
gagcaaaggtcactgctcaactctgatgctggttgcaccacgatgcagttggtgtgttct
caggagatgcacaatctgggttacgcctggagaaccatcaaagagcagcttggagaacag
attgagaaccacattcaaagaatgaccttccttaaaggcaaaacaggagtatgttttgat
gtcccagttgacaaagtcaaggagatgcaggagaactggaaggatggtcgccgttggcaa
ctgactgtagccacagaacttccagagttggaggagaagcagttcagtaaccgtggtgac
agagggtttggcggcggtaaccgcagtgacagaggaggagggttcagaggtggaagggga
cggaatttcgggggaaatggtggccgtggtaatgggttccggaatggcggcggtggctat
agcaacagaggaggacacaaacgcagcttcagccaagcttttgattactga
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