Seriola dumerili (greater amberjack): 111221029
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Entry
111221029 CDS
T05606
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111221029 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111221029 (pan3)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111221029 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
111221029 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_2
Pkinase
Motif
Other DBs
NCBI-GeneID:
111221029
NCBI-ProteinID:
XP_022600072
LinkDB
All DBs
Position
Unknown
AA seq
793 aa
AA seq
DB search
MNSGLPASAAPLGGAGIPNVKVKFCRYYAKDKTCFYGDECQFLHEDPSMASLPLHGGGGS
PVPLSMAGGGGTPAGYSLGGTAAACPGGGGTGVSKKSETLGPAGTSLEGQLLTIPGMEGA
TLSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTTSSSSPSLLNDGAKNFSHSTHDP
VNSPTSSLFSDFGALSISQRRKTPNPAASEFIPKGAPRMATMAQSTVQAFPSPLFPHPGL
STSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTTASDQGTHII
QKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQEL
INRHLITMAQIDHSENPDVPSEVDSYHSLFPLEPLPPPNRMQKTSNFSYITSCYKAVNSK
DDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFTTKAFGDHSLVFSYDFHA
GAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHT
AGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQQADLVSLGKVV
LALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFY
TQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLF
RDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDS
TFQELQAAASGSL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccgctcgggggtgccgggattcccaatgtc
aaggtgaagttttgccgatactacgcgaaagacaaaacgtgcttttatggagatgagtgt
cagttcctgcatgaggatccgtccatggcaagcctgccgctacacggtggcggcggtagc
cccgtcccgttgtccatggccggaggtggcgggacgccagcggggtattccctcggtggc
accgcggcggcctgcccgggtggcggggggaccggtgtgtccaagaagagcgaaacattg
gggcctgcaggcacgtctctggaggggcagctgttaaccatcccagggatggagggcgca
accctgagtgatgccaatcttaccaactcttacttcagcagcagctttattggggtcaat
gggtttggaagcccagcagagtctaaatactcaatgatgcagcgtatgactaccagcagc
agctctcccagtctcctcaacgatggtgccaagaacttcagccacagcactcatgatcca
gtgaactccccaacatcctcactgttcagtgattttggtgctcttagcatttcccaaagg
agaaagactcctaacccggcagcaagtgagttcatccctaagggagctccacgtatggcc
accatggctcagtccactgtccaagccttcccctcacccctcttcccacatcctggtctc
agcacttccacagctgctgcactggccccaggcatgtccttgtctgcggggtcatctcct
ctccactctccaaaaatcacaccgcacacctcacctgcccctcgtcggcgcagtcatacc
ccgaaccctgccaactacatggtgcccaccaccgcatctgaccagggcactcacattatt
cagaaagagactgtggggggtactacgtacttctacacagacaacactccagcgccaatg
gctggaatggtgtttcctacttaccatatctatccccctactgcaccccatgtggcttac
atgcagccgaaagcaaatgccccgtccttcttcatggctgatgagcttcgacaggagttg
ataaacagacatttgataaccatggcccagattgaccactcagagaacccagatgtacca
tctgaggtggacagctaccacagtctattcccccttgagcccctccccccaccaaaccgc
atgcagaagaccagcaacttcagctacatcacttcctgctacaaggctgtcaacagcaag
gatgacctgccttactgcctgaggaggatacatggtttccgccttgttaacaccaagtgc
atgatgctggtggacatgtggaagaagatccagcactccaactctgtaacactgagggag
gtcttcaccaccaaggcctttggagaccactctttggtgttctcttatgacttccatgcg
ggtgcagaaaccatgttcagcagacacttcaatgacccggctgcagactcgtactttact
aagaggaagtggggacaacatgagcctcccccgccacggcagcacgcaggtctgctccct
gagtctctgatctgggcctacattgtccagctcagctccgccctgcgcaccatccacact
gctggcctagcctgtcgtgtcatggaccccagcaagattctcattactggcaagaccagg
ttacgggtgaactgtgttggggtgtttgatgtcttaacatttgacaacagtcagaccaat
catcttgccctaatgccacagtaccagcaagcagacctagtgtcactgggcaaggtggtg
ctggcgttggcatgcaactccctggctggcattcaaagggagaacctgcagaaagccatg
gagctggtgtctatcaactactcttcagacctcaagaacctcattctgtatctgctgact
gaacagtctcgcctgcgcagtgtcaatgacattatgccgatgattggagcccgattctac
acacaactagatgcatcacagatgaggaatgatgtcattgaagaggacctggccaaggag
gtacaaaatggccgcctcttccgcctcttggccaaactaggcaccatcaacgagcggcca
gagtttcagaaggacccaacgtggtcagagacgggtgaccgctacctgttgaagcttttc
cgggaccacctgtttcatcaggtgacagaagctgggacgccctggatcgacctcagccac
attgtctcctgcctcaacaaactggacgcgggcgttcctgagaagatcagcctggtgtct
cgagatgagaaaagtgtcctggttgtgacctactctgacctgaagcgctgcttcgacagc
accttccaggagctgcaggctgcagcctccggctctctgtag
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integrated database retrieval system
