Seriola dumerili (greater amberjack): 111221142
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Entry
111221142 CDS
T05606
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111221142 (taf1c)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
111221142 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
111221142
NCBI-ProteinID:
XP_022600204
UniProt:
A0A3B4T554
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MDYEFPQQLFPSFYNCGPPDSILKYYNGGNWGCYGRVRPQGGSGPLSSWTFTSSHQVRGE
TWRQTQPVPLPLLSPKNSWLWPSEPPDPQDFTEHMHNFFMDHGQDAFGCMSEILGENFNF
KQGSRERYRRNSVSMWKVKNFLDMLKSKICHQSYFSISLDMYSVLLSDVVHSVPPELLGA
LLYEELTDQRDRQLFSEASTGGALDFIPFSESSSGSLHGCLLYPGNQGMDRLNFHRVELQ
HHRGSPSVLNASSSDPFSFQLKGPIRQISSASLFNNCCVAVRSDHLCGVWRFSETNEPRP
LQVINTREVATCVSVSPHILGEVLVASESGAANLWTVGKGMQKVREEDSNLYFNAKSSWR
WCEFSAHPRVMLYADRTGVELTDIRASPVCGHTLFNISKTSECRRGERLILSRYLGDVHS
FHHLITTQYSAYIMDERFPCVPMLKWDHMMQSPPMFCHVLPGSASSGTVVDGARTTKVLL
GSHSSQEITLLQYSGGRAEASFSRGPAQALLRPRDSLKHLPVQIPHRLDIASNRLSSPAA
GLTCLQKKGAKEAGGEDCICMLQLTEAGDIFYQILELEQPDSDTSRSSAAEDEPLPQHAT
KNLLQPTLTEATTSGSKTAGQLAPDSPLDTEDGWSDEGVIGPTQGPAVPRFVTETPEREQ
PAGIMYTDSDDSESERKGRKLKQLGLQVVVNDDPEPDHTNGLNAGEKDGKVGGDKADDTK
EPSGVEETQVKLSEAALITWKHWLQKLMQRNREKKPLPRCSQHFTIKTEGFLQMPDDETR
DSTEEERVQSLRQDLRACMSKRSLMVHSTVSTSLTAPDVVPVPNPVDTDVWRDQLSHRLT
LSWQGEEVWRAWWEDQLGLNREEKLKALKRKRRREKEAKRAAGRRLELSGSFTSSLSYQS
DLDSFSDSTGWSSAASQGWSDTEGTGPLSQLESFLEHGTPKATTSSTLQNDTPVSTPIAT
PQSVKNKQSDQQTPSSSGMFSLSRTVKADSTPASQRRNKRQAEDSLRSLFGPQDEPSQHN
IHFLEEESNVRAPPPSTSSLSSFSQLRSSQSVPQRSVRTDLSQDSSVWSGFSQSLPLSQI
SQGRLGLSQGSQASQPKKKKSRMGF
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggattacgagttcccacagcaactttttccttccttttacaactgcggaccgccggac
tctatcctgaagtactataacggtggaaactggggctgttacggccgagtcagaccgcag
ggcggctctggtcctctctccagttggacatttacatctagtcatcaggtcagaggggag
acttggcgtcagactcagcctgtaccgcttcccctcctgtctcctaaaaactcttggctc
tggccttcagagcctccagatccacaggacttcaccgaacatatgcataacttcttcatg
gatcacggccaggacgcctttgggtgcatgagtgaaattctgggtgaaaacttcaacttt
aaacaaggatcgagagaaagatatcggaggaattcagtctccatgtggaaagtgaaaaac
ttccttgatatgctgaagtctaaaatatgtcatcagtcatatttctccatatcgttggac
atgtacagcgtccttctgtcagacgtggtgcactctgtccctcctgagctgctgggtgct
ctgttgtacgaggagctgacagaccagagagaccgtcagctcttctctgaagcatccaca
ggtggcgctctggactttatccccttctcagagagcagcagcggctctctgcacggctgc
ctcctctaccccgggaaccagggaatggaccgcctcaacttccacagagtggagctgcag
caccacagaggaagtccctctgtcctgaacgccagcagcagcgacccgttcagcttccag
ctgaaaggccccatcagacagatcagctctgcctccctgttcaacaactgttgtgttgct
gtgcggtcagatcacttgtgcggagtttggaggttcagtgaaacgaacgaacctcgtccg
ctgcaggtcatcaacaccagagaggttgcaacctgcgtcagtgtcagtcctcatatttta
ggtgaagttctggtggcaagtgagagcggagcagcgaacctgtggactgttggcaaaggg
atgcagaaggttcgggaggaggacagcaacctgtacttcaacgccaagtcatcatggcga
tggtgcgaattctccgctcacccgagggtgatgttatacgcagacaggactggggtggag
ctcacagacatcagggcaagtcctgtctgtggtcacactctgtttaatatcagcaagacc
tcagagtgtcggcgaggagagagactcatcctgtccagatatctgggagacgtccactcc
ttccaccatctcatcaccactcagtactctgcttatatcatggatgagcgtttcccatgc
gtgccaatgcttaagtgggatcacatgatgcagtccccacccatgttttgccatgttctt
cctggctctgcctcttctggcacagtagtagatggggccaggaccactaaggtcctgttg
ggctcccacagttctcaggaaataaccctgttgcagtactcaggaggcagagcagaggcc
agttttagtcgaggtcctgctcaggctctgctcagacccagagatagtctgaaacacctt
cctgtccagattcctcatcgcctggacatcgcaagcaacagactgtcctcacctgctgca
ggtctgacttgtcttcagaagaaaggagccaaagaagcaggtggagaggattgtatatgc
atgctacagctgacagaggcaggagatattttctaccagatccttgagctggagcagccg
gacagcgacacatctcgatcttcagcggcagaggacgaaccactgcctcaacatgcaaca
aaaaacctgctacaaccaacgctgacagaagccacaacatcagggagtaaaacagcagga
caacttgcaccagattctccgctggatacagaggacgggtggagcgatgagggtgtgatc
gggccgacccagggtccagctgtgccgaggtttgtgactgaaacaccagagagagaacaa
ccagcagggatcatgtacactgattctgatgattcagagtcagaaaggaaaggtcgaaag
ctgaagcagttgggtctgcaggttgttgtcaatgatgatccagaaccggatcacacaaat
ggattgaacgcaggagagaaagatggaaaggtgggtggagataaagctgatgatactaag
gaacccagcggtgtggaggaaactcaggtaaagctcagcgaagctgctctcatcacctgg
aagcattggctccagaaactgatgcaaagaaatcgtgaaaagaagcccctcccacgctgt
tcgcagcacttcacaatcaaaactgaaggctttctccagatgcctgatgatgaaacaaga
gattcaacagaagaggagcgtgtgcagagcttgaggcaagatctgagagcgtgcatgtcc
aaacgctcactgatggttcacagcaccgtctccacctccctcaccgctccagatgtagtg
cctgtgccaaacccagtggacacagatgtctggagagatcagctcagccaccgcctgact
ctctcctggcagggggaggaagtgtggcgggcgtggtgggaggaccagctggggctgaac
agggaggagaagttgaaggctctgaagaggaagaggaggagggagaaggaggcgaagaga
gctgctggccggcgcttggagctgtccgggagcttcacctcatctctcagctaccaatca
gatctggacagtttctctgattcaacgggctggtcctctgcggcaagccaggggtggtct
gacactgaagggacagggccgttgtcccagttggagagctttttggaacatgggacgcca
aaagccacaacatcctccactttgcaaaatgacaccccagtatccacaccaatcgccaca
cctcaaagtgttaaaaacaaacaaagtgaccagcagactcccagcagctccggcatgttc
tctctgtccaggactgtaaaagcagactccacacctgccagtcagaggaggaacaaacgt
caagccgaagactccctccgctctctgttcggaccacaggacgagccctcacagcacaac
attcacttcctggaagaggagagcaacgtacgagccccacctccctccacatcgtcgttg
tcgtccttctctcagctccgcagttcacagtctgtccctcagaggagcgtcaggacggat
ctgtcccaggactcctccgtgtggtcgggtttctcccagtctctgcccctctcccagatt
tcacagggtcgactgggtttgtcgcagggatcgcaggcgtctcaacccaagaagaagaag
tcacgaatgggattttga
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