Seriola dumerili (greater amberjack): 111221231
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Entry
111221231 CDS
T05606
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111221231 (ythdc2)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111221231 (ythdc2)
Spliceosome [BR:
sdu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111221231 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
R3H
HA2_C
Helicase_C
DEAD
Ank_2
HA2_N
AAA_19
ATPase
Ank
Ank_5
Ank_4
nSTAND3
Ank_3
AAA_22
AAA_30
PhoH
AAA_7
SRP54
AAA_16
ResIII
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
111221231
NCBI-ProteinID:
XP_022600321
LinkDB
All DBs
Position
Unknown
AA seq
1391 aa
AA seq
DB search
MSNHGTASHKAAKSHSTPPRGSTYKGLKEIHIDEEVKIAVNLSLERFRYSDQREMEFPSS
LSSTERAFIHRMAQSLGYISKSKGKGPNRFLTIRKKDGSDKPRPTMPLTLSHNSLYFIRS
LLQRFPISNKERTDMLPNSKSGMSVPAEHDNSYDRNRASGRLNNGIPMVPRRRSPSDLDS
FRRSLPVHERQEEIVQLIKGNRVVLVVGETGSGKTTQIPQFLLDECSRNGEPCRIFCTQP
RRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMAGDASLT
TVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPSLKLILSSAALDTDLFLQYFGSCPVIHL
KGRQFEVQELFLEDVLRMTGFDSKDKTKYKEETQRKEKKQRRLTEWCKAVESSCGDEKQR
SPQSVPGVLQDNSCLDRGDTSFNKLTDTGSEQLEPWLLKEMDSCISSVFLGEDQDAFIQL
FNLILYEGVNVDYTHSETGATPLMVAAGRGFLTHMEQLLNMGADISIKASNGWTALDFAK
HFQQTEAADLLKSSIPLREASSLDESSLLQCDSAELSTEEQELLRLYHHSFDDEWVDLDL
IMDLLHNICSTTGDGAALIFLPGYDDIVALRDRILYDDKRFSFHSDRFQVFTLHSDMQTL
DQKKAMKTAPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSHVSMLKTVWI
SKASALQRKGRAGRCRPGVCFHLFSRLRFNNMLEFQVPQLLRMPLQELCLQTKLLAPSSS
PVTEFLSKAPQPPPAHAIRNAVHMLKTIDAMDQYEDLTDLGYHLADLPVEPHLGKMVLSA
VVLKCLDPILTIACTLAYRDPFVLPAQGSQKRAALHCRKRFTSSSFSDHMALLRAFQAWQ
KARSEGWERSFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENW
AVVKAALVAGMYPNLVHLNQETSLLSSNREKKVHFHPTSILSQFKENSSGKLARGLPTDW
LIYDEMSRGHRMASVRCCSMVTPITVAMFGGCAKLPSSALQEPAAQRATDGPLDDNSDSE
TEDQTELRIDDWLVFQLDREAASMVFELRQKWQSLFIKRIRCPSKPWSQQDEAIIRTLVS
VLAAEEQGAGLQQPSGIGQRPRPMSSEEGSQASVKNSKNGPQLPTNTTHDKSGRSPAASG
LVQLKVHRDESSLCDDPHSSSSLSSCSVTSDSPASSGKQVSQPVSPQLVSSVRYFIMKSS
SIRNIEISQQRGIWSTTPNNESKLSKAFLENNLIILIFSVQGSGRFQGYARMTSVISQES
CQDWGFVGLGGVFSVEWIHKESLPFQCTQHILNPWNDNKKVQISRDGQELEPQVGSQLLL
LWERNSGSQFQ
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccatggtacagcctcacacaaagcagccaagagccatagcacaccacccaga
ggctccacctacaaaggcctcaaagaaatccacattgatgaggaggtgaagatcgcagtg
aacctctctctggagaggtttcgctacagcgaccagagagagatggaatttccttcctcc
ctgtccagtactgagagagccttcatccatcggatggctcagtccctcggttacatctct
aagagcaaagggaaaggaccgaatcgcttccttaccatcaggaagaaggacgggtcagac
aaacctcggcccaccatgcccctcaccctctcccacaattctctatacttcatccgcagc
ctgctccagaggtttcccatcagcaacaaggaacgcacagacatgctgcccaatagcaag
agtggcatgtctgtgcctgcagagcacgacaacagctatgacaggaacagggcgagcggg
cgcttgaacaacggcattcccatggtgcctcggaggaggagtccctcagacctggacagt
ttcagacgctcgctccctgttcatgaacgtcaggaggagatcgtccagctcatcaaagga
aacagggtggtactggtggtgggagagaccggctccggaaagacaacgcagatcccacag
ttcctgctggatgagtgcagcaggaatggagagccctgcaggatcttctgcactcagccc
agacgcctggctgccatcgctgtggctgagagagtggccgcagagagaggagagagcgtg
ggccagactgtgggctaccacattagactggagagcagggtctctccaaagacactgctc
accttctgcaccagtggagtgttcctcaggacactgatggctggagatgccagtctgaca
actgtcactcatgtcattgtggatgaggtgcatgagcgtgacggtctgactgacttcctg
ctcactaagatgcgggacgtgctccagaagatcccctcactgaagctgatcctatccagt
gcggctctggacacagacctgttcctccagtactttggctcctgtcctgttatccacctc
aaagggagacagtttgaggtgcaggaactgtttctggaggacgtcctgaggatgacgggc
ttcgacagcaaggacaagacgaaatacaaggaggagacgcagagaaaggagaagaaacag
agacgattgactgagtggtgtaaggcagtggagagcagctgtggtgacgagaagcagagg
agtcctcagtctgtcccaggagtcctgcaggacaacagctgtctggacagaggggacacc
tccttcaacaagctgactgacaccggctcagagcagttggagccatggctgctgaaggag
atggactcctgcatctccagcgtcttcctcggtgaagaccaggatgccttcatccagctc
ttcaacctcatcctctatgaaggagttaacgtggactacacacacagtgagacaggggcc
actcccctgatggtggcagccggtcgagggttcctcacacacatggagcagctgctcaac
atgggggcggacatcagcattaaggcgtccaatggatggacggccttagactttgccaaa
cacttccagcagacagaggctgcggatctcctcaagtcctccatacctctgagagaggcc
agcagcctggacgagtcctccctgctgcagtgtgacagtgcagagctgagcaccgaggag
caggagctgctcagactctaccaccacagctttgatgatgagtgggtggacctcgacctc
atcatggatctgctgcacaacatctgctccaccaccggtgatggtgctgccctgatcttc
ctccctggatacgatgacattgtggccctcagggaccgcatcctgtacgacgacaagagg
ttctccttccactctgatagattccaggtgttcactcttcattcagacatgcagacgctg
gatcagaagaaagccatgaagacagctccacctggtgtcaggaagataattctttccacc
aacatcgctgagacgagcatcaccatcaacgacgtggtgtttgtcattgactcaggaaaa
gtcaaagagaagtcctttgacaccctcagtcatgtctccatgttgaagacggtgtggatc
tcaaaagccagcgctctgcagaggaaggggagagctggacgctgcagaccaggggtttgc
ttccacctcttcagtcgactccgcttcaacaacatgttggagttccaggttccacagctg
ctgcggatgcctctgcaggaactgtgtctgcagaccaagctgctggctccctcctcctct
ccagtcactgagttcttgtccaaagctcctcaacctcctcctgctcacgccatcaggaac
gctgtgcacatgctgaagacaatagatgctatggaccagtatgaggacctgactgatttg
ggctaccacctggctgatctacctgtagagccccacctgggtaagatggtgctgtccgct
gttgtgctcaagtgtctggacccgattctgaccatcgcctgtacgctggcctaccgtgac
cccttcgtccttcctgcccagggctctcagaaaagagccgctctgcactgtcggaaacgt
ttcacatccagcagcttcagcgaccacatggccctgctgagagccttccaggcgtggcag
aaggctcgcagtgagggctgggagaggtccttctgtgagaagaacttcctgtctcaggcc
accatggacatgatcctgggcatgaggacacagctgctgggacagctccgtgctattggt
tttgtgcgggcccgtggaggcagtgacatccgtgacgtgaacctgaactctgagaactgg
gccgtggtgaaggcagccctggtggctggcatgtatccaaacctggtccacttgaaccag
gagacctctctgctctccagtaacagggagaagaaggtccactttcatcccacctctatc
ctgagccagttcaaggagaacagctcaggcaaattggcccggggtcttcccacagactgg
ctgatctacgacgagatgagccggggacacaggatggccagtgtgcgctgctgctccatg
gtgactcccatcactgtggccatgtttggaggttgtgctaagctgcccagctccgccctg
caggagcctgccgctcagagagccacagacggtccactggacgacaacagtgacagtgag
acagaggaccagactgagctgaggatagacgactggctcgtcttccagctggacagagag
gctgctagcatggtgtttgagctgagacagaagtggcagagtttgttcatcaagaggatc
cgttgcccttcaaagccctggtctcagcaggacgaggccatcatccggaccctggtgtct
gtgttggcagcagaagagcagggggccggcctgcagcagccctctgggattggccagcgg
ccccggccaatgtcatcagaggaggggtcccaggcctctgtgaagaactccaagaacggc
ccccaactacccaccaacaccacccatgacaagtctggtaggagcccagcagcctcgggc
ctggttcagctcaaagtccacagagatgagtcctctctgtgtgatgaccctcactcctcc
tccagtctgtcttcctgctctgtgacctcagacagccccgcctcctcaggaaagcaggtt
tctcagcccgtgtccccccagctggtctcatcggtgcggtacttcatcatgaagagcagc
agcatcaggaacatagagatttctcagcagagagggatctggtccaccacaccaaacaat
gagagcaaactctccaaggccttcctggagaacaacctcatcatcctcatcttctctgtt
cagggctctggtcgcttccagggctacgctcgcatgacatcagtcatcagtcaggagagc
tgtcaggactggggcttcgtgggactgggaggggttttcagtgtggagtggatccacaag
gagagtctccccttccagtgcacccaacacatcctgaacccctggaacgacaacaagaag
gtccagatcagcagggacggacaggagttggagcctcaggtgggcagtcagctgctgctg
ctgtgggagagaaactctgggagtcagttccagtga
DBGET
integrated database retrieval system
