Seriola dumerili (greater amberjack): 111222599
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Entry
111222599 CDS
T05606
Symbol
dhx16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111222599 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111222599 (dhx16)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111222599 (dhx16)
Spliceosome [BR:
sdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111222599 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
111222599 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
nSTAND3
PWI
Motif
Other DBs
NCBI-GeneID:
111222599
NCBI-ProteinID:
XP_022602112
UniProt:
A0A3B4TTA3
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVSQFMIGTARKALNAQDFVSRLEQTGTIDIDQSVIAFA
QELFDKIPRKQVVEKASRAMEREAIEMDKKNRTYTLLEDSDSDEDTVQEKQKGKKKSKDK
DRGNKRKHIRRKKESESSSEDEAPKRSNSAQLVKKDEEEEEEWEKEERERLQDIEERDAF
AERVRQKDKDKTRNITERTDKKAYEEAQKRLKMAEEDQNNMLPELRKRSRWEYLKKREAE
KLEDLEAEIIDDEYLFSTDELTERERKELEYKRTLRDLAKDYKKAGAKEQEERKNRYYMP
EEKRSKEVPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKKEREQGMRKEQEKYQL
ILEEEEMIDFVSTAITMKGTRTEKDQEAPALSQAELKKQSMQEVRRSLPIFPYREDLLAA
IQEHQILVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAAMSVAARVAQEMSV
KLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDI
LFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADY
LEACVVSVLQIHVTQSPGDVLVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIYANL
PSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIV
TPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLG
INDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILAS
EQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWLES
GFSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSQGDNVPIRKAVTAGYFYHT
ARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEV
APHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctagagcagtgggttagtgaccgtctccatgacatcctcgggttgagtgac
agatacgtgtctcagttcatgattggtactgcacggaaagcattgaatgcacaagacttc
gtgtctcgccttgagcagacgggcacaattgacatcgaccagagtgtgattgccttcgca
caagagctctttgacaagattcctcgcaagcaggttgttgagaaagcatcccgtgcgatg
gaacgagaagccattgaaatggataagaaaaatcggacgtacacgttactggaggacagc
gacagtgatgaagacactgtgcaggagaaacagaaagggaaaaagaaaagcaaggacaag
gacagaggaaacaagaggaagcacatcagacggaagaaagagagcgagtcctctagtgag
gatgaagcacctaaacggagtaattcagcccagttagtaaagaaagacgaggaggaagag
gaagaatgggagaaggaagagcgagagcgactgcaggacattgaagagagagacgcgttt
gccgagcgagtgaggcagaaagacaaggacaagacccgcaacataacggagaggactgac
aaaaaggcttatgaggaagctcagaagaggctgaagatggctgaagaggatcagaacaac
atgttgccagagttgaggaagcgctctcgctgggagtatctaaagaagagagaggcagag
aagctggaggacctggaggcagagatcatagacgacgagtatcttttctctactgacgag
ctgactgagagggagagaaaggagttggaatacaaacgcacccttcgggacctggctaaa
gattacaaaaaggccggtgccaaggaacaagaggagaggaagaacagatactatatgcca
gaagagaagagaagcaaggaggtgccccagagggacctggagctggaggaaactcccatg
gagctgggaggagagcaaggccgctgggaggaggagaggttgaaaacagcctccctcagc
ttcggggccaagaaggagcgagagcaagggatgaggaaggaacaggagaagtaccagctg
atcctggaggaggaggagatgatcgactttgtcagcactgccattaccatgaagggaact
cggacagaaaaggatcaggaggccccggctctgtcgcaggcggagctgaagaaacagtcc
atgcaggaggtccgacgcagccttcccatcttcccctacagagaggacctgctagctgcc
atccaggagcaccagatcctggtcattgaaggggagacgggctccggaaaaaccacccag
atcccacagtacctcctggaagatggatacactaaaggaggcatgaagatcggttgcaca
cagcctcgcagagtggcagccatgtcagttgcagccagagtggcacaggaaatgagcgtc
aagcttgggaacgaggtgggttacagcattcgttttgaggactgcacatcagagagaacg
gtgctcaagtacatgacagacggcatgctgctccgagagtttctcaccgagcccgacctg
gccagctacagtgtgatcatcatagatgaggcccatgagcgaacgctccacacagacatc
ctgtttggtctgattaaggacattgccaggttcagaccagacctgaaggtgctggtggcc
agcgctactctggacaccgagcgcttctcctgcttttttgacgacgctcctgtcttcagg
atccctggcaggaggttcccagtcgacatcttctacactaaagctccagaggcagactac
ctggaagcgtgtgttgtgtcagtgctacagatccatgtcacccagtctcctggagatgtt
ctggtcttcctcactggacaggaggagatcgaagcgtgttgcgagctgctccaggagaga
tgcaggcggctgggatctaagatcgcagagctgctggtccttcccatctatgccaacctg
ccatccgacatgcaggcgaagatcttcaaccccactccgcctggggcccgtaaggtggtg
gttgctaccaatatagcagaaacctcactcaccatagatggaatcatctacgtcatcgat
ccaggcttttgcaagcagaagagttacaacgcccgcactggcatggagtcactcattgtc
acgccctgctcacgggcttcggccaaccagagagcaggccgtgcaggcagagtggctgct
gggaaatgttttaggctttacacagcctgggcctttaaacatgagatggaagaaaccacc
gtgcctgagattcagaggaccaatttgggaaatgtagtcctgctgctgaagagtctaggc
atcaatgacctcattcactttgacttcatggacccaccccctcatgagactctggtctta
gcgctggagcagctctacgccctgggagcactcaaccacctgggagagctcacaaagctg
ggtcgcaggatggctgagttacccgtggaccccatgctgagcaagatgatcctggcgtcc
gagcagtacaagtgttcagaggaagtgttgacaatagcagccatgctgtcggtgaacaac
tctattttctaccggcccaaagacaaagtggtgcacgccgacaacgccaggatgaacttt
gtggtgccagggggagaccacctggtgctgctcaacgtctacacacagtggctggagagc
ggcttctccacacagtggtgctacgagaacttcatccagtttcgctccatgagaagagcc
cgggatgtcagggaccagctggagggtctgatggatcgcatagaggtggaggtggtcagc
tcccagggagacaatgtgcccattcgcaaggcggtgactgcaggatatttctatcacacg
gcacgactgagcaaaggcggctacaagacggtgaagcaccagcagacggtctacgtccac
cccaacagctctctgttcgaggagcagccccgctggctcatctaccacgagctggtcttc
accactaaggagttcatgagacaggtgattgagatagacagcggctggctgcttgaagtg
gctcctcactactacaaaagcaaagagctggaggacagcagcagcaagaagatgccccgc
aagcagggtaaaactaaagaagagctgggctga
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integrated database retrieval system
