Seriola dumerili (greater amberjack): 111223052
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Entry
111223052 CDS
T05606
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111223052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111223052
03036 Chromosome and associated proteins [BR:
sdu03036
]
111223052
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111223052
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111223052
PBAF complex
111223052
GBAF(ncBAF) complex
111223052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
111223052
NCBI-ProteinID:
XP_022602751
UniProt:
A0A3B4TW78
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MATMSGGANLGIPGTSQTSSGAAVHRKKESSPSARFWESPDTLAQLEVVRQWIGKHYKKF
VLVDAPSCQALAAVTLQLLQFQEDAFGRQATSPALTKLPAQCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFGTIEGALIQNNCMSLPVVYLDPTLDQELASRLTN
IITKHQGTLTEDRTLASHHVYPSSASTEEDEWMCPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEGEVEEPPHPEKPWRVHAGWVLDTDVFNEWMNEEDYCVDERNVPIILRQRIHLRDDQ
DSKSTPSKKRRRSPSPPSSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRGEMPRLSEGEDNITEQTHHII
IPSYTSWFNYNSTHLIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVAASQHMLYFPEKSREKPSDCQNFGLRTDIYAKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASAAAKAALEEFSRVQEDSVDKVSETSNQPEKIESMDAEKM
ETNSTSHQVPGRADGLKVEPSGAKVEGEQVKRENAENILGEERDGRGDDDESVVRREGDA
DEGRRVMELELVEGSVTTAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIK
LRHFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQPGYTMQH
SGQSMPNRMMPSGGNTQPMAPRHPGAPNGMYPSSQPDGIAPAQPGPPASTHS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggagcaaacctcgggattcccgggacgagccagaccagctcc
ggggcggctgtgcatcggaaaaaagagagcagcccgtccgccaggttctgggagagtccg
gatactttagcccaactggaggtggtgcgacagtggatcgggaagcactacaaaaagttt
gtgttggtggatgctccatcatgccaggccctggctgcagtcactttacagctgctccag
tttcaggaggatgcctttggccgacaagctaccagtcctgctctcaccaaactgcctgct
cagtgcttcctggacttgcgaccagggggtggactctgccacattcttggcactgcctac
aagttcaaagcagagcaaggctggcgaagatttgacttgcagaatccatcaagaacagag
aggaatgttgagatgtttggtacaattgaaggggcactgatccagaacaattgtatgtca
ctgcctgtggtatatctggaccccactcttgatcaggagttagcaagcagactgaccaat
atcatcaccaagcaccagggtacactcactgaggaccgaacgcttgccagtcaccacgtc
tacccctcatctgcttctacagaggaagatgaatggatgtgtcctgtcatgcgaaaagac
aagcatgtattggtacattggggcatgcaccctgacagttatgacagctggctgtcctca
agtgatgttgaaggagaggttgaagagccaccacatccagagaaaccctggagggtccat
gctggttgggttctagacacagatgttttcaatgagtggatgaacgaggaagactattgt
gtggatgagaggaatgtaccaataatcctccgccagcgtattcacctccgagatgaccag
gactcaaagtccaccccatccaaaaagagaagacgatccccctctcctccttcctctgaa
ggcaggaagaaaggaaagaagggtagaaggcgtggacaacaggaggaagagccagaagag
gacctgaccaaagacatggaggaccctacgcctgttcctaacatggaggaagtcatatta
cccaagaatgtcaacctgaaaaaagacagtgagaatactcctgttaaaggaggcaccatg
gccgacctggatgaacaggaggatgattttccaggaagggaggatgaagagggaagagga
gagatgccacggttatcagagggagaggacaatatcacagaacaaacccatcacattata
ataccaagctacacatcttggttcaattacaacagcactcacttaatagagaaacgtgca
ctgcctgaattctttaatggcaagaacaagtccaaatctccagaaatttacctggcgtac
cgcaacttcatgatcgacacataccggctcaacccccaggaatacctcagttcaacgtcc
tgcagacgcaacctcaccggagacgtctgtgctgtcatgagggttcatgcgtttttggag
cagtggggtttgattaactaccaagtggatgctgagagcagacccctccccatgggaccc
ccacccacccctcatttcaacgtactcgccgacacgccgtccgggctggccccactacag
cacaaacccctgcaggtggccgcctcgcagcacatgttgtatttcccagaaaagagcaga
gagaagccttcagactgccagaacttcggtctgcgcaccgacatctatgccaagaaacac
ccgaagactaaaggagcaagtgcaggaagggaatggacagagcaagagacactcttgtta
ttagaggccttagaggtttacagagacgactggaacaaagtatccgagcacgtgggctcc
agaacgcaggacgagtgtatcctccacttcctccgtctgccgatagaagacccttatcta
gaagactcctcggcctctctgggtccactggcgtaccagcctgtgcctttcagccaatcg
gagaatcccgtaatgagcactgtggccttcctggcatccgtggtggatccacgggttgca
tcagctgcagctaaggcggcactggaggagttttccagagtgcaggaggactcagtggac
aaggtttctgaaacgtccaatcagcccgaaaaaatagaatcgatggatgcagaaaaaatg
gagacaaactccacctcccatcaggtccctggaagggcggatgggctcaaggtggaacct
agtggggcaaaagtggagggagaacaagtcaaaagggaaaatgcggaaaatattcttgga
gaggagagagatggaaggggagatgatgacgagagcgtagtgcggcgagagggagacgcg
gacgaggggaggagagtgatggagctggagctggtggagggcagtgttaccacggcagca
gcagctgctctggcctcagctgccacaaaggccaagcacttggctgcagtagaagagagg
aagatcaagtccctggtggctctgttggtggagactcagatgaagaagctggagatcaaa
ctgagacactttgaggagctggagaccatcatggaccgcgagaaagaggctctggagcag
cagcggcagcagcttctatcagagagacagacttttcacaccgagcagctgaaacaggca
gagatgaaggtccgccagcagagggagcagcaggggcagccaggatacacaatgcagcat
tctggtcagtccatgcccaaccgtatgatgcccagtggaggcaatacccagccgatggcc
ccgcgacaccctggagctccgaacggcatgtacccgtcctcacagcctgatgggatcgca
ccagctcagcccggtcctccagcgtccacccacagctga
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