Seriola dumerili (greater amberjack): 111223572
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Entry
111223572 CDS
T05606
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111223572 (focad)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111223572 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
111223572
NCBI-ProteinID:
XP_022603487
UniProt:
A0A3B4TBC6
LinkDB
All DBs
Position
Unknown
AA seq
1807 aa
AA seq
DB search
MESLKARFDFPSPVIQAETVRNLVAAVLKEKGQNGQITQSSLQGPALEALWQQCCSDCAR
VCSACCDAVVLLVDQGHADLHYVLNSVLNLLPSASNAQGLIKVIGRLLQIQADQRDGETA
FTCPYSIRTSPHPYITALENRVDCWPALLLEIDDFIQQAADRNQPVYITMLAPFLQYLYC
EPQRQPQHALFRHSLLRVLLPTYPRVGSVLQDKDQEKPSTVSDSLLHCLCQLVPYMQVDS
MEAVLELCGFVDTLLQGLVGVSEEHRRTERARLLLHLLCACQRCLQLNGDCRPLLNLLQQ
LLPAGQQELPVDELMMGVALLLLEAPAVQQTSLLGLALSLAPEQAELAPWLSPVLVLPVL
QLLSCSGLTEPLADRRTHSLNKSLAHSLLRSISRQADTPQQPAPPLVLPLSSWYSELTVA
LSILRKVADDPAPATDWLLSVRLAVSSGQRLPCSLTLIVTYLIITGQEDVCQLALDTCQS
FAAADPCQVPSLIPVLLFKLGKEKNPDLAHALLNCLPNLGTHKLCVPMVLQTLHMLASSL
KLRAVAMRLMTALWKKQDRVYPELQRLLGQQDNRVVVGRDAQWEQILARAACLRDICRER
PYQHGGDMLAAITHTLNQCTRPDMATPAALALQGLQELCRAEVVDIISTWRRLGPELSCE
SRPLMVRVIAELLALVPQLTVKSEEYEKLKEEVVSFLWNYTVNKDPEVASCGYRALADFP
EEVHTITLLPEAARPPTKLPEGEEDEQGEEIEEEKKDLSVPGSSYVKLMALTPTPVLPAF
ELFLTSLVKQEMSQMPRGVYFSALRGGNLHSDQGKTVAGIPAFMLKTYEKNKQPGLKPGL
AAGLLLSYELPVQTDRNGKPIDRFLVSRSRSHQQTLTALIHEVNIQPSEWHRALLLPQAW
RGFMSRAFHAILQGRRADLEMQQKQGKENPEELQYKQHCAWLWARDQLADVIKAATKDSP
VVQGNSILALSGLAAVLTKYESNLPTDSDGSLRAGPEFVPTASWLSMVFETLLSIISSSY
KARGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDALVQVLSALKAGLP
GSPTADDSQAVQFHSGLALGMVLCSLQHQRLSDISAQKDTDLLLSPLGALESCSFNPDLE
YNTGCMLGLGLVLAALCSSGQKDQHIHVMLTLDKLLSSLQDNSGQGRMMQEVLAYSVACV
GVSAFSGGLIDAAKAEEVMNTLRTLTEESQQTPGFSLALGLVVHGLSLSGHGKAEDIHPR
LLAAWIKILLTEGCPTMQRLAAVNGLVALVGSESYLIQLKSELELSSQQQSRLNEVIRAI
TQVITFSGAIGLQSNSACLMGHLHLAHMSTSHTQTAVPQNFSYLSEKSVLRPIIDFISEA
GKKGRESSAPALVKTALTPLASVGASFQYPPINWSAVLSPLMRLSFGEEVQHQCVVLAAS
QAQSSQSASLFLGSWLSPPLVHSLSYQTRAHLYDTLGLWMKHVAEDKLQVYMESLGLQQF
QEDLQPQRLSLCRSLLQGLAQAMALPNPPSNCWTILCSTTEKIFTLLPNQIQDDEVDLYT
GVARCLSEMSDTEIDRIARVTKIQMEKTCFILAYLTSQGRVPLLGLNDIIAGVLRGWPSR
RVGWILLQTFYQCRLATSSNTGISRRMEWLLELMGHIRNVAYGATSVTCGDTKLATDFLF
QVFAAAVVSWGDHFMPLLYGIRAQWFPWQQGSKPRALQHGLYGEESLTDHALPQCLLGMP
HSLALLLGKEPWSSQTQKFIDWLLSITEAPGQSVSTATTSTAKAALLALKSSAEFKKKAV
WTRAYGW
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagagtttaaaggcacgatttgattttcccagccccgtcatacaagcagagacagtg
agaaatcttgttgctgctgtgctaaaggaaaaagggcaaaatggacaaatcacacagtcg
tcccttcagggcccagcattggaggctctatggcagcaatgctgcagtgactgtgctagg
gtgtgttcagcctgctgtgatgccgtggtgctgctggtggatcagggccacgcagacctg
cactacgtcctcaacagtgtcctcaacctgctaccctctgctagcaatgcccagggactg
ataaaggtgattggacggctgctgcaaattcaggcagaccagagagacggagaaacagcc
ttcacctgtccctactccatcaggaccagccctcacccatatatcacagccctggagaac
cgagtggactgctggccagctctgctgctggagattgatgatttcattcagcaggctgct
gacagaaatcaaccagtctacatcaccatgctggcccccttcctgcagtacctgtactgt
gaacctcagaggcaaccccagcacgccctcttccgacacagcctcctcagggtgctgctg
cccacatatcccagagttggatcggtcctccaggacaaggaccaggagaagccctccaca
gtgtctgacagcctgctgcactgcctctgccagctggttccatacatgcaggtggacagc
atggaggcggtgctggagctgtgtggattcgtggacactctgcttcagggtcttgttgga
gtctctgaggagcaccggaggactgagagagccaggctgcttctgcatctgctgtgcgcc
tgtcagcgttgcctccagttgaacggagattgtcggccacttctcaacctgttacagcag
ctacttcctgctggccaacaggagctgccagtggacgagttgatgatgggtgtggctttg
ctcctgctggaggcccctgcggttcagcagaccagcctgctcggtctggcactgagttta
gctcctgagcaggctgagctggcaccctggttgagtccagtcctggttcttcctgtgctg
cagctgctgtcctgctcaggcctcactgagcctctggctgaccggaggacacacagcctc
aacaagagcctggcccacagcctgctccgcagcatcagcaggcaggcggatacaccccaa
cagcctgctccaccactcgtgcttcctctcagttcctggtacagcgagctcactgtggct
ctctccatactgcgtaaagtggcagatgatccagcgccagccactgattggctgttgtcg
gttcgcttggccgtgtcgtccggtcagcgtctgccctgctccctcaccctcattgtgacc
tatctcatcattacgggtcaggaagatgtctgccagctggctttggacacatgccagtcc
ttcgctgcagctgacccctgccaggtcccctccctcatccctgttctgttgttcaaactg
gggaaggaaaagaatccagacctggctcatgctttgctgaactgcttgccaaaccttggg
actcataagctgtgtgtcccaatggtgctacagactctccacatgcttgccagctccctt
aagcttagagctgtggcgatgcgcctcatgactgctctctggaagaaacaggaccgagtt
tacccagagctgcagcgtctgctgggtcagcaggacaacagggtggtggtggggagggac
gcccagtgggaacagatcctggcccgggctgcctgcctcagggacatctgcagagagagg
ccttatcagcacggaggtgatatgttggctgctattacacacactctgaaccagtgcacc
agaccagacatggcaaccccagctgctctcgccctgcaaggactacaggagctgtgccgg
gcagaggtggtggacatcatctcgacatggaggcgccttgggccggagctcagctgtgaa
tcccgtccactgatggtcagagttatagcggagctcctggctctggttccccagctcact
gtaaagtcagaggagtacgagaaactgaaagaggaggtggtcagctttctttggaattat
actgtgaacaaggatccagaggtggccagctgtggctacagggctcttgcagattttcct
gaagaggtccacacaataactctccttcctgaggcagccaggccgcccacaaagctgcct
gagggtgaagaggatgagcagggggaggagatagaggaagagaagaaggatctctctgtc
ccaggttcatcttacgtgaagctgatggctctcacccccacacctgttcttccagcgttt
gagctcttcttgacgtcactggtgaagcaggagatgagccagatgccacggggggtatac
ttctctgccctgaggggggggaacctgcactcagaccagggtaaaacagtggcaggaatc
ccagcgttcatgctaaaaacctatgagaaaaacaagcagcctgggctgaagcctggacta
gcagctggtctgctgctcagttacgagctccctgtgcagactgatcgcaatggcaaaccg
atcgatcgcttcctcgtgagccgcagccgcagccaccagcagaccctgaccgcccttatt
catgaggtaaacatccagccgtctgaatggcaccgggctctcctcttaccccaggcctgg
aggggcttcatgagccgagcttttcacgccatcttacagggtcgacgtgctgacttggag
atgcaacagaaacaaggcaaagagaaccccgaggagctgcagtacaaacagcactgtgcc
tggctttgggccagagatcagctggcagacgtcatcaaagctgctacaaaggacagtcct
gttgttcagggaaactcaattctggctctgagcggcctggctgctgtcctcactaaatac
gagagcaacctgcccactgacagcgatggcagcctcagggctggaccagagtttgtgccc
acagccagctggttatccatggtgttcgagaccctgctcagcataattagcagcagctac
aaggccagaggacaagttttcccatggttcctgcatcgttcctactcaggtgagaacaca
gcaagtgccattgctcgctcctgtgccagtctagcgttgtccttgctggttccagtgctg
gtggtatggcagagggatgccctggtccaggtcctgtcagccttgaaggcaggcctgcct
ggctcacctactgctgatgactcccaggctgtccagttccactccggccttgcgctgggc
atggtgctgtgcagtctgcagcatcagcgcctcagtgacatctctgctcagaaagacact
gatcttctcctcagccctctgggtgctctggaaagttgctccttcaaccccgacctggaa
tacaatactggctgtatgttgggtctgggtctggtgctggcagctctctgcagtagtgga
cagaaggaccaacacatccacgtcatgctaacactggacaaactactatccagcctgcag
gacaacagcgggcagggacgcatgatgcaggaggtcttggcgtactctgtggcgtgtgtg
ggcgtctcagccttcagtggaggccttatagacgctgccaaggctgaggaggtcatgaac
actctgcgcaccctgactgaggagagccagcagaccccaggtttctctctggctctgggg
ctggttgtccacggcctgtcactgtctggtcacggtaaagcagaggacatccacccccga
ctgctggctgcctggatcaagatcttactgactgagggttgtcccactatgcagcgactg
gctgctgtcaacggactggtggctctagtgggatctgagagttacctcattcagctgaaa
agtgagctggagctttcctcccagcagcagagccggctgaatgaggtcattcgagccatc
acacaggtcataacgttctcaggtgccattggtttacagtccaacagcgcctgtttgatg
ggtcacttacatttggcccacatgtccaccagccacactcaaacagcagttcctcagaat
ttcagttacctctcagagaaaagtgtcctcagacccatcattgacttcatctcagaggca
ggaaagaaaggtcgtgagtcctctgctccagctctggtgaagactgcactgaccccgctg
gcttcagttggagccagtttccagtacccgcccataaactggagcgctgtcctgtctcct
ctgatgaggctcagcttcggagaggaggtgcagcatcagtgtgtggtactggcagcgagt
caggctcagtcttcccagagtgcatctctcttcctgggctcttggctgtccccccccctg
gtgcacagtctcagttatcagacccgggctcacctgtatgacacccttggcttgtggatg
aagcatgttgccgaggacaagctccaggtctacatggagagtctgggtttgcagcagttc
caggaggaccttcaaccccagcgtctgtccctgtgccgctctctcctgcagggcctcgct
caggccatggccctcccaaacccccccagtaactgctggactatcctctgctccaccact
gagaagatcttcaccctcctgccgaaccagatccaggatgatgaagtggatttgtacaca
ggagtggccagatgtctgtctgagatgtctgatacagagattgatcgaattgctcgagtt
actaagatccagatggagaagacctgcttcatcctggcttacctgacttcccagggcaga
gttcccctccttggtctcaatgacatcatcgctggtgtgcttcgtggttggccaagccgc
agagtcggctggattctcctccaaacgttttatcagtgtcgcttggcaaccagttccaac
acgggcatctccagacggatggagtggctcctggagctgatgggccacattcgaaatgtt
gcctacggtgcaacgtctgtcacatgtggagacacaaaactggccacagacttcctgttc
caggtctttgctgctgctgtagtttcctggggggaccacttcatgccactcctctatggc
atccgggcccagtggtttccatggcaacagggctccaagcctcgagctctgcaacacggt
ctctatggagaggagtcactcactgaccatgccctgccacagtgtctgctgggaatgccc
cacagcctggctctgcttctgggcaaagagccctggagcagccagacacagaagttcata
gactggcttctcagcatcacagaagctcctggccagagtgtgtcgactgcgaccaccagc
acagccaaagctgctctgttggctctgaagtcctccgctgagttcaagaagaaagctgtg
tggaccagagcttatggctggtaa
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integrated database retrieval system