KEGG   Seriola dumerili (greater amberjack): 111223572
Entry
111223572         CDS       T05606                                 
Symbol
focad
Name
(RefSeq) focadhesin
  KO
K27498  focadhesin
Organism
sdu  Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdu03019]
    111223572 (focad)
Messenger RNA biogenesis [BR:sdu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     111223572 (focad)
SSDB
Motif
Pfam: Focadhesin DUF3730
Other DBs
NCBI-GeneID: 111223572
NCBI-ProteinID: XP_022603487
UniProt: A0A3B4TBC6
LinkDB
Position
Unknown
AA seq 1807 aa
MESLKARFDFPSPVIQAETVRNLVAAVLKEKGQNGQITQSSLQGPALEALWQQCCSDCAR
VCSACCDAVVLLVDQGHADLHYVLNSVLNLLPSASNAQGLIKVIGRLLQIQADQRDGETA
FTCPYSIRTSPHPYITALENRVDCWPALLLEIDDFIQQAADRNQPVYITMLAPFLQYLYC
EPQRQPQHALFRHSLLRVLLPTYPRVGSVLQDKDQEKPSTVSDSLLHCLCQLVPYMQVDS
MEAVLELCGFVDTLLQGLVGVSEEHRRTERARLLLHLLCACQRCLQLNGDCRPLLNLLQQ
LLPAGQQELPVDELMMGVALLLLEAPAVQQTSLLGLALSLAPEQAELAPWLSPVLVLPVL
QLLSCSGLTEPLADRRTHSLNKSLAHSLLRSISRQADTPQQPAPPLVLPLSSWYSELTVA
LSILRKVADDPAPATDWLLSVRLAVSSGQRLPCSLTLIVTYLIITGQEDVCQLALDTCQS
FAAADPCQVPSLIPVLLFKLGKEKNPDLAHALLNCLPNLGTHKLCVPMVLQTLHMLASSL
KLRAVAMRLMTALWKKQDRVYPELQRLLGQQDNRVVVGRDAQWEQILARAACLRDICRER
PYQHGGDMLAAITHTLNQCTRPDMATPAALALQGLQELCRAEVVDIISTWRRLGPELSCE
SRPLMVRVIAELLALVPQLTVKSEEYEKLKEEVVSFLWNYTVNKDPEVASCGYRALADFP
EEVHTITLLPEAARPPTKLPEGEEDEQGEEIEEEKKDLSVPGSSYVKLMALTPTPVLPAF
ELFLTSLVKQEMSQMPRGVYFSALRGGNLHSDQGKTVAGIPAFMLKTYEKNKQPGLKPGL
AAGLLLSYELPVQTDRNGKPIDRFLVSRSRSHQQTLTALIHEVNIQPSEWHRALLLPQAW
RGFMSRAFHAILQGRRADLEMQQKQGKENPEELQYKQHCAWLWARDQLADVIKAATKDSP
VVQGNSILALSGLAAVLTKYESNLPTDSDGSLRAGPEFVPTASWLSMVFETLLSIISSSY
KARGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDALVQVLSALKAGLP
GSPTADDSQAVQFHSGLALGMVLCSLQHQRLSDISAQKDTDLLLSPLGALESCSFNPDLE
YNTGCMLGLGLVLAALCSSGQKDQHIHVMLTLDKLLSSLQDNSGQGRMMQEVLAYSVACV
GVSAFSGGLIDAAKAEEVMNTLRTLTEESQQTPGFSLALGLVVHGLSLSGHGKAEDIHPR
LLAAWIKILLTEGCPTMQRLAAVNGLVALVGSESYLIQLKSELELSSQQQSRLNEVIRAI
TQVITFSGAIGLQSNSACLMGHLHLAHMSTSHTQTAVPQNFSYLSEKSVLRPIIDFISEA
GKKGRESSAPALVKTALTPLASVGASFQYPPINWSAVLSPLMRLSFGEEVQHQCVVLAAS
QAQSSQSASLFLGSWLSPPLVHSLSYQTRAHLYDTLGLWMKHVAEDKLQVYMESLGLQQF
QEDLQPQRLSLCRSLLQGLAQAMALPNPPSNCWTILCSTTEKIFTLLPNQIQDDEVDLYT
GVARCLSEMSDTEIDRIARVTKIQMEKTCFILAYLTSQGRVPLLGLNDIIAGVLRGWPSR
RVGWILLQTFYQCRLATSSNTGISRRMEWLLELMGHIRNVAYGATSVTCGDTKLATDFLF
QVFAAAVVSWGDHFMPLLYGIRAQWFPWQQGSKPRALQHGLYGEESLTDHALPQCLLGMP
HSLALLLGKEPWSSQTQKFIDWLLSITEAPGQSVSTATTSTAKAALLALKSSAEFKKKAV
WTRAYGW
NT seq 5424 nt   +upstreamnt  +downstreamnt
atggagagtttaaaggcacgatttgattttcccagccccgtcatacaagcagagacagtg
agaaatcttgttgctgctgtgctaaaggaaaaagggcaaaatggacaaatcacacagtcg
tcccttcagggcccagcattggaggctctatggcagcaatgctgcagtgactgtgctagg
gtgtgttcagcctgctgtgatgccgtggtgctgctggtggatcagggccacgcagacctg
cactacgtcctcaacagtgtcctcaacctgctaccctctgctagcaatgcccagggactg
ataaaggtgattggacggctgctgcaaattcaggcagaccagagagacggagaaacagcc
ttcacctgtccctactccatcaggaccagccctcacccatatatcacagccctggagaac
cgagtggactgctggccagctctgctgctggagattgatgatttcattcagcaggctgct
gacagaaatcaaccagtctacatcaccatgctggcccccttcctgcagtacctgtactgt
gaacctcagaggcaaccccagcacgccctcttccgacacagcctcctcagggtgctgctg
cccacatatcccagagttggatcggtcctccaggacaaggaccaggagaagccctccaca
gtgtctgacagcctgctgcactgcctctgccagctggttccatacatgcaggtggacagc
atggaggcggtgctggagctgtgtggattcgtggacactctgcttcagggtcttgttgga
gtctctgaggagcaccggaggactgagagagccaggctgcttctgcatctgctgtgcgcc
tgtcagcgttgcctccagttgaacggagattgtcggccacttctcaacctgttacagcag
ctacttcctgctggccaacaggagctgccagtggacgagttgatgatgggtgtggctttg
ctcctgctggaggcccctgcggttcagcagaccagcctgctcggtctggcactgagttta
gctcctgagcaggctgagctggcaccctggttgagtccagtcctggttcttcctgtgctg
cagctgctgtcctgctcaggcctcactgagcctctggctgaccggaggacacacagcctc
aacaagagcctggcccacagcctgctccgcagcatcagcaggcaggcggatacaccccaa
cagcctgctccaccactcgtgcttcctctcagttcctggtacagcgagctcactgtggct
ctctccatactgcgtaaagtggcagatgatccagcgccagccactgattggctgttgtcg
gttcgcttggccgtgtcgtccggtcagcgtctgccctgctccctcaccctcattgtgacc
tatctcatcattacgggtcaggaagatgtctgccagctggctttggacacatgccagtcc
ttcgctgcagctgacccctgccaggtcccctccctcatccctgttctgttgttcaaactg
gggaaggaaaagaatccagacctggctcatgctttgctgaactgcttgccaaaccttggg
actcataagctgtgtgtcccaatggtgctacagactctccacatgcttgccagctccctt
aagcttagagctgtggcgatgcgcctcatgactgctctctggaagaaacaggaccgagtt
tacccagagctgcagcgtctgctgggtcagcaggacaacagggtggtggtggggagggac
gcccagtgggaacagatcctggcccgggctgcctgcctcagggacatctgcagagagagg
ccttatcagcacggaggtgatatgttggctgctattacacacactctgaaccagtgcacc
agaccagacatggcaaccccagctgctctcgccctgcaaggactacaggagctgtgccgg
gcagaggtggtggacatcatctcgacatggaggcgccttgggccggagctcagctgtgaa
tcccgtccactgatggtcagagttatagcggagctcctggctctggttccccagctcact
gtaaagtcagaggagtacgagaaactgaaagaggaggtggtcagctttctttggaattat
actgtgaacaaggatccagaggtggccagctgtggctacagggctcttgcagattttcct
gaagaggtccacacaataactctccttcctgaggcagccaggccgcccacaaagctgcct
gagggtgaagaggatgagcagggggaggagatagaggaagagaagaaggatctctctgtc
ccaggttcatcttacgtgaagctgatggctctcacccccacacctgttcttccagcgttt
gagctcttcttgacgtcactggtgaagcaggagatgagccagatgccacggggggtatac
ttctctgccctgaggggggggaacctgcactcagaccagggtaaaacagtggcaggaatc
ccagcgttcatgctaaaaacctatgagaaaaacaagcagcctgggctgaagcctggacta
gcagctggtctgctgctcagttacgagctccctgtgcagactgatcgcaatggcaaaccg
atcgatcgcttcctcgtgagccgcagccgcagccaccagcagaccctgaccgcccttatt
catgaggtaaacatccagccgtctgaatggcaccgggctctcctcttaccccaggcctgg
aggggcttcatgagccgagcttttcacgccatcttacagggtcgacgtgctgacttggag
atgcaacagaaacaaggcaaagagaaccccgaggagctgcagtacaaacagcactgtgcc
tggctttgggccagagatcagctggcagacgtcatcaaagctgctacaaaggacagtcct
gttgttcagggaaactcaattctggctctgagcggcctggctgctgtcctcactaaatac
gagagcaacctgcccactgacagcgatggcagcctcagggctggaccagagtttgtgccc
acagccagctggttatccatggtgttcgagaccctgctcagcataattagcagcagctac
aaggccagaggacaagttttcccatggttcctgcatcgttcctactcaggtgagaacaca
gcaagtgccattgctcgctcctgtgccagtctagcgttgtccttgctggttccagtgctg
gtggtatggcagagggatgccctggtccaggtcctgtcagccttgaaggcaggcctgcct
ggctcacctactgctgatgactcccaggctgtccagttccactccggccttgcgctgggc
atggtgctgtgcagtctgcagcatcagcgcctcagtgacatctctgctcagaaagacact
gatcttctcctcagccctctgggtgctctggaaagttgctccttcaaccccgacctggaa
tacaatactggctgtatgttgggtctgggtctggtgctggcagctctctgcagtagtgga
cagaaggaccaacacatccacgtcatgctaacactggacaaactactatccagcctgcag
gacaacagcgggcagggacgcatgatgcaggaggtcttggcgtactctgtggcgtgtgtg
ggcgtctcagccttcagtggaggccttatagacgctgccaaggctgaggaggtcatgaac
actctgcgcaccctgactgaggagagccagcagaccccaggtttctctctggctctgggg
ctggttgtccacggcctgtcactgtctggtcacggtaaagcagaggacatccacccccga
ctgctggctgcctggatcaagatcttactgactgagggttgtcccactatgcagcgactg
gctgctgtcaacggactggtggctctagtgggatctgagagttacctcattcagctgaaa
agtgagctggagctttcctcccagcagcagagccggctgaatgaggtcattcgagccatc
acacaggtcataacgttctcaggtgccattggtttacagtccaacagcgcctgtttgatg
ggtcacttacatttggcccacatgtccaccagccacactcaaacagcagttcctcagaat
ttcagttacctctcagagaaaagtgtcctcagacccatcattgacttcatctcagaggca
ggaaagaaaggtcgtgagtcctctgctccagctctggtgaagactgcactgaccccgctg
gcttcagttggagccagtttccagtacccgcccataaactggagcgctgtcctgtctcct
ctgatgaggctcagcttcggagaggaggtgcagcatcagtgtgtggtactggcagcgagt
caggctcagtcttcccagagtgcatctctcttcctgggctcttggctgtccccccccctg
gtgcacagtctcagttatcagacccgggctcacctgtatgacacccttggcttgtggatg
aagcatgttgccgaggacaagctccaggtctacatggagagtctgggtttgcagcagttc
caggaggaccttcaaccccagcgtctgtccctgtgccgctctctcctgcagggcctcgct
caggccatggccctcccaaacccccccagtaactgctggactatcctctgctccaccact
gagaagatcttcaccctcctgccgaaccagatccaggatgatgaagtggatttgtacaca
ggagtggccagatgtctgtctgagatgtctgatacagagattgatcgaattgctcgagtt
actaagatccagatggagaagacctgcttcatcctggcttacctgacttcccagggcaga
gttcccctccttggtctcaatgacatcatcgctggtgtgcttcgtggttggccaagccgc
agagtcggctggattctcctccaaacgttttatcagtgtcgcttggcaaccagttccaac
acgggcatctccagacggatggagtggctcctggagctgatgggccacattcgaaatgtt
gcctacggtgcaacgtctgtcacatgtggagacacaaaactggccacagacttcctgttc
caggtctttgctgctgctgtagtttcctggggggaccacttcatgccactcctctatggc
atccgggcccagtggtttccatggcaacagggctccaagcctcgagctctgcaacacggt
ctctatggagaggagtcactcactgaccatgccctgccacagtgtctgctgggaatgccc
cacagcctggctctgcttctgggcaaagagccctggagcagccagacacagaagttcata
gactggcttctcagcatcacagaagctcctggccagagtgtgtcgactgcgaccaccagc
acagccaaagctgctctgttggctctgaagtcctccgctgagttcaagaagaaagctgtg
tggaccagagcttatggctggtaa

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