Seriola dumerili (greater amberjack): 111223942 Help Entry 111223942         CDS       T05606                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism sdu  Seriola dumerili (greater amberjack) Pathway sdu04510   Focal adhesion sdu04512   ECM-receptor interaction sdu04518   Integrin signaling Brite KEGG Orthology (KO) [BR:sdu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     111223942    04518 Integrin signaling     111223942  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     111223942  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sdu00536]     111223942 Glycosaminoglycan binding proteins [BR:sdu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    111223942 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  111223942 NCBI-ProteinID:  XP_022603976 LinkDB All DBs Position Unknown AA seq 1491 aa AA seqDB search MFSFMDSRTVLLLVATQVCLLAVVRCQEEDDQEDAFSCLQDGQRYSDKDVWKPEPCRICV CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADTSTPIGVPGAKGQKGEPGDITDVV GPRGPAGPMGPPGEQGPRGSRGEKGEKGTPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGQS GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYPGLD GAKGETGAVGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP GAKGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA GPQGAHGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPA GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR GQPGVMGFPGPKGATGESGKSGEKGLSGAPGLRGLPGKDGETGPAGPPGPAGPAGERGEQ GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPE GAPGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTSGEK GDAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGGAGDR GPPGPVGPPGLTGPGGEPGREGNPGSDGPPGRDGAAGIKGDRGNTGPAGAPGAPGAPGAS GPVGPTGKQGDRGEAGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFT GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGANGLPGPIGPPGPRGRSGET GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN METGESCVYPKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT FLRLLSTEASQNLTYHCKNSVAYMDASMGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVEVGAVCFL NT seq 4476 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtctgtcta ttagccgttgtgagatgtcaggaggaggacgaccaggaggatgcttttagctgtttacag gacggacaacgctatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc aaacctgaaatcccatttggagagtgttgccccatctgcgcagctgacacatctacgccc attggagtacctggagctaagggtcagaaaggtgaacctggagacattactgatgttgta ggaccaagaggacctgctggccctatgggcccaccaggagagcaaggaccccgtggatca agaggagagaagggagagaagggaacccctggtccccgtggcagagatggtgagcctggc acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggcctcggc ggaaactttgctgctcagatggctggtggctttgacgagaaggctggcggcgcacagatg ggtgtgatgcaaggaccaatgggccctatgggacccagaggaccacctggcccctccgga gcacctggcccacaaggtttccaaggcaacccaggagaggctggcgagcccggacaatct ggccccatgggtccccgtggcccccctggaccttctggaaaacctggagatgatggtgaa gctggcaaacctggcaaatcaggcgagcgtggacctactggacctcagggagctcgtgga ttcccaggaactcctggtctgcccggcatcaagggacacagaggttatccaggtcttgat ggtgcaaagggagagactggagctgttggttctaagggtgaggctggcgctcccggagag aacggcgctcctggaccaatgggacctcgtggtttgcccggtgagagaggtcgtcctgga cccagtggagctgctggagcccgtggaaatgatggcttgcccggccctgctggtccccca ggccctgtcggtccttctggagctcctggcttccctggctctcctggtgcaaagggagaa gctggtcctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtctggc actcctggatcatctggaccttctggcgcttctggcaaccccggtactgatggcatccct ggagctaaaggatcatctggtgctcctggtatcgctggtgctcctggtttcccaggacct cgtgggcctcccgggcctcagggagctactggacctctcgggcccaaaggaacatctgga gacccaggtattccaggattcaagggagaggctggaccaaaaggagaaattggaccagct ggtcctcagggagcacatggcccacagggagaagagggcaagagaggacccaggggtgag cccggtgctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggt ttccctggtcaagatggtctggctggtcccaagggagcccccggtgagcgtggacccgct ggtgctagtggtcctaagggtgctaacggtgaccccggccgtcctggagagtctggtctg cctggtgccaggggcctgactggacgccctggtgacgctggtcctcaaggcaaagttgga ccttctggagctcctggtgaggatggacgtccaggaccccccggcccacagggagcccgt ggacagcctggtgtcatgggattccccggacccaagggagcgactggtgagtctggcaag tctggtgagaaaggactgtctggagctcctggtctgagaggtctgcctggcaaagatgga gaaaccggccctgctggaccccccggccctgctggccctgctggagagagaggagagcaa ggacagcccggtccctctggcttccagggtctgcctggacctcctggcccccccggcgag ggaggcaagcccggagaccagggtgttcctggagagggtggagctgccggtgccactggc cccagaggagagcgtggtttccccggagagagaggagctgctggtcctcagggtctgcag ggacccaggggtcttcctggaactcctggaactgacggacccaagggagccattggacct gccggtgccgctggagctcaaggaccccccggcctgcagggtatgcctggagagagagga gctgctggcattcccggacctaaaggagacagaggtgacattggagagaaaggacctgaa ggtgctcccggcaaagacggtgccagaggtctcacaggtcccatcggtcctccaggtcct tctggtcccaacggtgagaagggtgaatctggtcctgctggtccttctggagctcctggt acccgcggtgcgcctggtgacaggggtgagactggacctcctgggcctgctggatttgct ggaccccctggagctgacggtcaacctggaaccaagggagagcagggagaatctggacag aagggagacgctggtgcccctggaccccaaggaccatctggtgcccctggacctgcaggt cctacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact ggtttccctggagctgctggccgtgttggaccccctggtcccaatggtaatcctggacct gctggtcctgccggccctcctggcaaagatggacccaaaggagtgaggggagatggtgga cctccaggcagacagggtgacgctgggctccgcggtcctgctggcacttctggagagaag ggagatgctggagaggatggtcctcctgggcccccaggtccttcaggtcctcagggtttg gccggtcagcgcggtattgtcggtctacctggacagcgtggtgagagaggtttccctggt ctgcctggaccttctggtgagcccggaaagcagggaggtcctggtggcgctggagaccgt ggaccccctggaccagttggacctcctggactcacgggacctggaggagagcctggcaga gagggcaaccctggatctgatggacctcctggtagagatggtgcagctggaatcaagggt gatcgtggtaacaccggtcctgctggtgctcctggtgccccaggcgctcctggtgcctcc ggtcctgttggtcctaccggcaaacagggagacagaggagaggctggtgcacaaggacct tctggacctccaggacctgccggagcaagaggaatgcccggaccccaaggaccccgtggt gacaaaggtgaggctggagaggctggtgagagaggacagaagggacacagaggcttcact ggtctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacct gctggaccttctggacaaagaggaccccctggacctgttggccctgctggaaaggacggt gcaaacggcctgccaggacccattggaccccctggacctcgtggtcgctctggagagacc ggtcccgctggtccccctggaaaccctggaccccccggtcctcctggtccccctggccct ggcatcgatatgtctgccttcgctggcctgggtcagactgagaagtcccctgatcctctc aggtacatgagggccgaccaggcttccggaaacctccgtcagcacgatgctgaggttgac gccaccctgaaatctctcaacaaccagatcgagaacatccgcagccctgagggatccaag aagaaccctgctcgcacctgcagggacctgaagctctgccatcctgactggaagagcgga gagtactggattgaccccaatcagggctgcactattgatgcaatcaaggtcttctgcaac atggagacaggagagtcctgcgtctaccccaagccttccagcatccctcgcaagaactgg tggtccagcaagagcaaagaccgcaaacacgtctggttcggagagacaatgaacggagga ttccactttagctatggtgatgacagcctggcgcccaacactgctgccattcagatgacc ttcctgagactgctgtccaccgaggcctctcagaacctcacctaccactgtaagaacagc gtggcctacatggacgcctcaatgggcaacctgaagaaggccgtgctgctgcagggctcc aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggac ggctgcacaaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag acctctcgtctccccattgtggacattgcccccatggatattggtggagcagagcaggag ttcggagtcgaagttggagcagtctgcttcttgtag

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