Seriola dumerili (greater amberjack): 111224135
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Entry
111224135 CDS
T05606
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111224135 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111224135 (prpf8)
Spliceosome [BR:
sdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111224135 (prpf8)
Complex C
U5 SnRNP specific factors
111224135 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
111224135
NCBI-ProteinID:
XP_022604269
UniProt:
A0A3B4TDH1
LinkDB
All DBs
Position
Unknown
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPAGMPPGVPPPVPVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDTEEDASVVEWFYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaccttcccctatagaggggtccctgcagggatgccaccaggtgtaccccct
cctgtgccggttccagattatatgtctgaggaaaaacttcaagagaaagcaagaaaatgg
cagcagttgcaggcaaagcgctactcagaaaagagaaagtttggttttgtggatgctcag
aaggaggacatgccgcctgagcatgtacggaagatcatcagggaccatggagatatgacc
aatagaaaatttcgccatgacaagagggtctaccttggtgccctcaagtacatgccccat
gcagtgctgaagctgctggagaacatgcctatgccctgggaacagattcgagatgtgcct
gtcctctaccacatcactggagccatttcctttgtgaatgaaatcccttgggtcatagag
ccagtctacattgctcagtggggcaccatgtggatcatgatgcgtcgtgaaaagcgtgat
cgacggcacttcaagcggatgcgctttccaccgtttgatgatgaggagccgccgctggac
tatgctgacaacatccttgatgtggaaccactggaggccattcagatggaactggacact
gaggaggatgcttcagttgtggagtggttctatgagcatcagcccctcaaagacactgca
aagtttgtgaacggcaccacctaccgtcgctggcagttcacactgcccatgatgtccacg
ttgtaccgtctggccaatcagctgttgacagacctggtggatttcaattacttttatctt
tttgacctcaaggccttcttcacatccaaggccttaaatatggccatccctggagggcca
aagtttgagccactggtccgtgacatcaacctccaggatgaagactggaatgagttcaac
gacatcaacaaaatcatcattcgacagcccatcaggacagagtacaaaattgctttcccc
tacctgtacaacaacctgccacaccacgtccaccttacttggtaccacacaccaaatgtg
gtgtttatcaagacagaggatccagatcttcccgcgttctacttcgacccgctgatcaac
cccatttcacacagacattctgttaagagtcaggagcctctgcctgatgatgatgaggag
tttgagcttcctgagtatgtggagcccttcctcaaagagaccccactctacacagacaac
acagccaatggaattgctctgctgtgggcgccaagacccttcaacctccgatctggccgc
acaaggcgtgccattgatatccccctgataaagaactggtaccgtgagcactgccctgca
ggacagccagtgaaagtgcgtgtgtcatatcagaaactgcttaagtattatgtgctcaat
gctctgaaacacagaccacctaaggcccagaagaagaggtatctgttccgctctttcaag
gccactaagttctttcagtccaccaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggctacaacatgctcaatctgcttatccaccgtaagaacctcaactacctgcat
ctcgactacaacttcaacctgaagcctgttaagacactgaccacaaaggagcgaaagaag
tcccgattcggcaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtgcagtacagattgggaaatgttgatgctttccagttggctgatgga
ctgcagtacatcttcgctcatgtgggtcagctgacaggcatgtaccgctacaagtacaag
ctgatgagacaaatccggatgtgcaaggacctgaagcatctcatctattaccggttcaac
actggtcctgtgggcaagggtccaggttgtggcttttgggctcctggctggagagtgtgg
ctgttcttcatgaggggcatcactccactgttggagaggtggctggggaatctgctggcc
aggcagtttgaaggacgccactccaagggcgtggccaagacggtgaccaaacagcgtgtg
gagtctcactttgaccttgagctgcgtgctgcagtgatgcatgacatccttgacatgatg
cctgagggtatcaaacagaacaaggccaggaccatcttgcagcacctcagtgagtcctgg
aggtgctggaaggccaacatcccttggaaggtgccaggtctgcccacccccattgagaac
atgatcctgcgctacgtgaaggccaaagctgactggtggaccaacacggcccactacaac
cgcgagcgaattcgtcgtggagccactgtggacaagacggtttgcaagaagaacctgggc
agactgacccgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggcccctacatcaccgctgaagaggcagtagccatttacaccaccaccgtgcactggctg
gagagtcggcggttctcacccatccccttccctcctctgtcctacaaacatgacaccaaa
ctgctcatcctggccttggagaggctcaaggaagcatacagtgtgaagtctcgtctgaac
cagagtcagagggaggagctggggctgatagagcaggcttacgacaatcctcacgaggcc
ctgtccaggatcaaacgtcacctgctcacacagagagccttcaaagaggtgggtattgag
ttcatggacttgtacagccatctggtgccggtgtacgatgtagagcccctggagaagatc
accgacgcctacctggaccagtacctgtggtacgaggcagacaagagacgccttttccca
ccctggatcaaacctgctgacacagaaccaccaccactgctggtctacaagtggtgccaa
ggcatcaacaacttgcaggatgtgtgggagactgcggagggagagtgcaacgtgatgctg
gagtcccgctatgagaagatgtatgagaagattgatctgacattgctcaacaggctgctg
cgtcttattgttgaccacaatatcgctgattacatgacagccaagaacaacgtggtcatc
aactacaaagacatgaatcacactaactcctatggcatcatcagggggctccagtttgcc
tcgttcattgtacagtactacggcctggtgatggaccttctggtgctgggtttgcaccgt
gccagtgagatggctggcccaccgcagatgcccaacgacttcctcagtttccaagacaca
gccaccgaaagtgcccacccaatccggctctattgccgctacattgaccgcatccacatc
ttcttcaggttctctgctgacgaggccagggatctaattcagaggtatttgacggagcac
ccagaccccaacaatgagaacattgtgggttacaacaacaagaagtgctggccccgtgat
gctcgcatgagactgatgaagcacgatgtcaatctaggacgtgctgtgttctgggacatc
aaaaatcgcctgcccaggtctgtgaccactgtccaatgggagaacagctttgtgtcggtc
tacagcaaagacaaccccaacctgctcttcaacatgtgtggttttgagtgccgcatcctc
cccaagtgccgcaccagctatgaggagtttactcacaaggatggtgtctggaacctgcag
aatgaggtgaccaaagagaggacagcacaatgtttcctgcgtgtggatgatgaatcaatg
cagcgcttccacaacagggtgcgtcagatcctgatggcttccggatccaccacattcaca
aagattgtgaacaaatggaatacggctctgatcggcttgatgacatacttccgtgaggct
gtggtcaacacccaggagctcttggacctcctggtgaagtgtgagaacaagatccagaca
cgtatcaagattggcctcaactccaaaatgcctagccgctttcctcctgtagtcttctac
actcccaaagagctgggtggccttggcatgttgtccatgggccatgtgcttatcccacag
tcagacctgcggtggtccaagcagacagatgtgggcatcacccacttcaggtctggaatg
agccatgaagaggaccagctgattcctaacttgtatcgttacattcagccatgggagagt
gagttcatcgactctcagagggtctgggccgagtatgctctcaagagacaggaggccatt
gcccagaacaggcgtctcaccctggaggatttggaggactcatgggacagaggaatcccc
cgtatcaacactctcttccagaaggacagacacacattggcttatgacaaaggctggaga
gtcaggacagattttaagcagtaccaggtgctaaagcagaatccgttctggtggacccat
cagaggcacgatggcaaactgtggaacctgaacaactaccgcacagacatgattcaggct
cttggcggtgttgagggcatcttggaacacactctcttcaaaggcacttattttcccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaatgcccagaggtctggtctcaaccaaatccccaaccgtcgcttcacactttgg
tggtcacccaccatcaacagagcaaatgtgtatgtgggtttccaggtgcaacttgacctg
acaggaatctttatgcatggaaagatccccacactgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcatgagagcattgtcatggatctgtgtcaggtgttt
gaccaggagctggatgctctggagattgagacagtgcagaaggagaccatccaccccagg
aagtcatacaagatgaactcgtcctgtgcagacatcctcctctttgcatcctacaagtgg
aatgtctctcgaccatctctgcttgctgactccaaggatgtgatggatagcaccaccaca
caaaagtactggattgacattcagctccgctggggtgactatgactcgcatgacattgag
cgctacgccagggccaagttcctggactacaccaccgacaacatgagtatctacccctcc
cccactggggtgctcattgctatcgacctggcttacaacctccacagtgcttatggtaac
tggttccctgggagcaagcctctgatccaacaggccatggctaaaatcatgaaggccaac
cctgccctgtatgtgctcagagagcgcatccgcaaaggtctgcagctgtactcttcagag
cccactgagccatacctgtcctcacagaactatggtgaactcttctccaaccagatcatc
tggttcgttgatgacaccaatgtctaccgagtcaccattcacaagacctttgagggtaat
ttgaccacgaagcccatcaatggagctattttcatcttcaaccccaggactggtcagctc
ttcctcaagatcattcatacatctgtgtgggctggacagaaacgtctgggacagctggcc
aaatggaagacagccgaagaagtggctgccctgattcgctccctccctgtagaagaacag
ccgaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctc
gacttccccaacattgtgatcaagggctctgagttacagctgcccttccaggcctgtctg
aaggtggagaagtttggtgacctgatccttaaggctacagagcctcagatggtgcttttc
aacctctatgatgactggctcaagaccatctcatcttacacagccttctcccgactcatc
ctgatcctcagagcactccacgtcaacaacgaccgtgcaaaggtgatcctgaagcctgac
aagacgactatcactgagccccatcacatttggcccacgctcacagatgaggagtggatc
aaggtggaagtgcaactcaaggatctcattctggccgattatggcaaaaagaacaatgtg
aatgtggcctcactgacccagtctgagatccgtgacatcatcctgggtatggagatctct
gctccgtcacagcagcgccagcaaattgctgagattgagaaacagaccaaagagcagtcg
cagctcaccgccacacagacccgcactgtcaacaagcatggtgatgagatcatcacctcc
accacctccaactatgagacccagaccttctcatccaagactgagtggagagtgagagcc
atttctgccgccaacctgcatctccgaaccaaccacatctatgtttcatctgatgacatc
aaggagacaggttacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagatctacgagcacagattgcaggttacctctacggcaccagcccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtgccacaatgggggacacatcagactgtc
cacctgcccaaccagctgcctggtcatgaataccttaaagaaatggagcccctcggctgg
atccacacccagcctaatgagtcacctcagctgtctccgcaggatgtcactactcatgcc
aagatcatggctgacaacccttcttgggatggagaaaagaccatcatcatcacttgcagc
ttcaccccaggctcatgcacgctcacagcctacaaactgacacccagtggctacgagtgg
ggtcgtcagaacacagacaagggcaacaatcctaaaggttacctgccttcccactatgaa
agagtgcagatgcttctctctgatcgcttcctgggcttctttatggtgcctggccaagtc
tcctggaactacaacttcatgggtgtgcgccatgatcccaacatgaagtacgacctgcag
ctggccaaccccaaagagttctaccacgaagtccatcggccctcgcacttcctaaacttc
gcctcactgcaggagggtgagatctacaacgccgaccgagaggacatgtacgcttga
DBGET
integrated database retrieval system
