Seriola dumerili (greater amberjack): 111224833
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Entry
111224833 CDS
T05606
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111224833 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
111224833 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111224833 (lsm8)
03041 Spliceosome [BR:
sdu03041
]
111224833 (lsm8)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111224833 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
111224833 (lsm8)
Spliceosome [BR:
sdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111224833 (lsm8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
111224833
NCBI-ProteinID:
XP_022605221
UniProt:
A0A3B4UP06
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccctggagagctacattaaccgcacagtggctatcgtcacctccgacggc
aggatgattgtgggcacgctgaagggcttcgatcagaccatcaacctgatcttggatgag
agtcatgagcgggtgttcagctccagccagggggtcgagcaggtggtgctgggactctac
atcgtccgaggagacaacgtggcggtgattggcgagatcgacgaggagacagactccact
ctggacttaggaaacatcagagccgagccgctcaactctgtcgtccactga
DBGET
integrated database retrieval system
