Seriola dumerili (greater amberjack): 111224837
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Entry
111224837 CDS
T05606
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03013
Nucleocytoplasmic transport
sdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111224837 (upf2)
03015 mRNA surveillance pathway
111224837 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111224837 (upf2)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111224837 (upf2)
mRNA cycle factors
P-body specific factors
111224837 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111224837
NCBI-ProteinID:
XP_022605231
LinkDB
All DBs
Position
Unknown
AA seq
1287 aa
AA seq
DB search
MTDVCFATVSSMPAERKRSVNMDEKDVCSFSNKEKEKDRDGERRPASARDKAKDEAKMSG
KKEGGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRQQEEQERKLQEE
EAKRQREEEAALLKEKEEGHQLHQEAWERHQCRKELRSKNQNAHEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYAEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKNIISTDRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAADKFGLSFPPSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSGQGKDKDDAKDGKEGKDTASTTEELELELEALEITDEPL
ELEGADEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGVNQDGSPSPLDPPEHLFRLRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLDEATKQVADLEREVLVK
LGMAMGKDGRSSAMSEGDGLDEEDDDDDEEGGADTEEQSGNESEMNEQEEDDGSENEEEE
REEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQ
RSGEAVKVHQLDVAIPLQLKSQLKKGGSGQTCIGEGDSDISDTMQFVMLTRKGNKQQYKI
LNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTN
RERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacagttagcagtatgcctgctgaacgcaagcgctcagta
aacatggatgagaaagatgtttgctccttcagtaacaaggaaaaagagaaggacagagat
ggtgagagaagaccagcgtctgctcgggacaaagcaaaagatgaggccaaaatgagtggt
aagaaagaaggtggcaaggaggagaaaagaaagcgcctagaggaggaaaagaagaagaaa
gaggaaaaggagcgaagaaagaaggaggaggaaaaacagaaagcggaggaggaacagaaa
aagaaagaggaggaggagaagaggcaacaggaggagcaggagaggaaacttcaagaggag
gaggctaaaagacaacgtgaagaggaggcagcactcctgaaggaaaaggaggaggggcat
cagctgcaccaggaggcctgggagcgccatcagtgcaggaaggaactccgcagcaagaac
cagaacgcccatgagggtcgacctgaagaggccttcttcagccgactggactccagcctt
aaaaagaacactgcctttgtcaagaagctgcgtacactcactgaacagcagcgggattca
ctctccaacgactttgcttcactgaacctcagcaagtacatcggcgaggccgtgagctcc
gtcgtggaggccaagctgaagatctctgatgtgggctgcgctgtgcatctgtgctccctc
ttccaccagcgctacgctgagttcgctccgttactgttacaggcgtggaaaaagcacttt
gaagcaaggaaggaggacaaggcgcctaatgtgagcaagctgcgcacagatctgcgcttc
attgccgagctcaccatcgtcggcctcttcacagacaaggagggtctctcactgatttat
gagcagctgaagaacattattagcaccgaccgggagacgcacactcatgtgtcagtggtc
atcagcttctgtaagcactgtggggacgacattgctggtctggtgccccgtaaggtgaaa
ctggctgctgacaagtttggcttgtccttccctccgagcgagatcatcagcacagagaaa
cagcagcccttccagaaccttctacgggagtacttcacatcactcaccaaacacctgaag
aaggaccaccgggagctgcagaacattgagaggcagaacaggcgaatccttcattccaaa
ggggagctgagtgaggacaggcacaagcagtatgaagagtttgccacttcctaccagaag
ctgctggccaacactcagtccctggctgatctgctggatgaaaacatgccagagctgcct
caggacaagactgtgcaagaggagcatggtcctggtattgatattttcacccctggtaag
cccggagagtatgacctggaaggagggatctgggaagatgaagacgctcgtaacttctat
gagaacttggtggacctgaaggctttcgtccctgccatcctcttcaaggacaacgagaag
agcggccaggggaaagacaaggatgacgccaaagatgggaaagaagggaaggacacagcc
agcaccacagaggagctggagctggagctggaggctctggaaatcacggatgaacctctg
gaactggagggagcagacgaagcggaaaacgaagaactggccaaaaaacttctggatgag
caagaacaagaggacgaggaggccaacacagggtcccacttgaagctaatcgtggacgcc
ttcatccagcagctccccaactgtgtcaacagagacctcatagacaaggctgccatggac
ttctgcatgaacatgaacaccaaatctaacaggaggaagcttgtccgtgctctcttcact
gtccccaggcagaggttggatctgctgcccttctactctcgcctggtggcaactcttcat
ccctgcatgtcagatgtggctgaggacctctgctccatgctgaagggagacttcaggttt
cacattcggaagaaggaccagatcaacatcgagaccaaaaataaaacggtcagatttatc
ggggaactggccaagtttaagatgttctcaaaaacagacacgctgcattgtctcaagatg
ctgctgtctgatttcacccatcaccacatagagatggcctgcacactgctggagacctgt
ggccgcttcctgttcagatcccccgactctcacctgcgtaccagcgtcctgctggagcaa
atgatgcgtaaaaagcaggcgcagcatctggacgctcgctatgtgactatggtggagaat
gcgtactactactgcaaccccccgcccatggagaagacggtgaaaaagaagcggccgccg
ctgcaggagtacatccgcaagctgctctacaaggacctgtccaaggtcaccaccgagaag
gtgctgaggcagatgcgcaaactgccgtggcaggaccccgaggtcaagagctacctgatc
tgctgcatggtcaatatctggaacgtcaagtacaacagcatccactgcgtggccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatccatgtggtggacggagtgctg
gaggacatccggctgggcatggaggtcaaccagcccaagttcaaccagcggcggatcagc
agcgccaagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcattttc
cgcaccctcttctccttcatctccttcggggtcaatcaggacggcagccccagccctctg
gaccccccagagcacctgttccgcctccgcatggtctgcaccttgctcgatacgtgcggc
cagtactttgaccgcggctccagcaagagaaagctggactgtttcctcatctacttccag
cggtacatctggtggaagaagagcattgatgtttggaccaaggaccacccgttccccatc
gacatcgactacatgatcagtgacaccctggagctgctcaggcccaagatgaggctcagc
tgctccctggacgaggccacgaaacaggtcgccgacctggagagggaggtgcttgtcaag
ctaggtatggccatggggaaggacggccgctccagcgccatgagcgaaggggacgggctt
gacgaggaagacgacgacgacgacgaagagggaggcgctgacactgaggagcagtcaggc
aacgagagcgaaatgaatgaacaggaagaggatgatgggtctgagaacgaagaagaagag
agggaggaagaggaagaagagaacaccgactacctgaccgactccaataaagaaaacgag
actgatgaggagaacaatgaggtgaccatccgtggcggtggactgaagcacgtggcctgc
gctgaggatgaggacttcattcaggctctggataagatgatgctggagaacctgcagcag
cgcagcggcgaggcggtgaaggtgcaccagctggacgtggccattcctctgcagctgaag
agtcagctgaagaaggggggctccggacagacgtgcatcggggagggagactcggacatc
tccgacaccatgcagtttgtcatgctaacgcgcaagggcaacaagcagcagtataagatc
ctgaacgtgcccctgtcatcacacctggcggcgaaccacttcaaccagcagcaggcggag
caggaggagcgcatgaggatgaagaaactcaccctggacatcaatgagagacaggagcag
gaggactaccaggagatgatgcagtccctcgcccagcgcccggctccggccaacaccaac
cgggagcgtcggcctcgttaccagcacccgaaaggtgctcccaacgccgacctcatcttc
aagaccggaggaaggagacgctga
DBGET
integrated database retrieval system
