Seriola dumerili (greater amberjack): 111225211
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Entry
111225211 CDS
T05606
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111225211 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111225211 (edc4)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111225211 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
111225211 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
RMC1_N
Motif
Other DBs
NCBI-GeneID:
111225211
NCBI-ProteinID:
XP_022605669
LinkDB
All DBs
Position
Unknown
AA seq
1393 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNGTDAQSSDGERKPSFNGELNGLLGTAGILGSTD
RSTMSDSTRPISTDISTAQESQIICLSGDDGSTCIPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKFDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLAFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQMVVHIKRPEDTPLNSHRRLIW
CPFILDDNEENQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPIDATDLKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSALPSLKASLDLS
AEYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEV
LPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPTMGSSSAVFLPHSD
SQDGFAGFSDHLTDQSSDKDSGSGSQTDLRKIPSLPAPADFLSNSTPGSGPMPKLMTPDA
FMTPSTSVPASPGSSASSLTIVTAISSNSDSTNRAIDDVSQSPNRAENNSSSSLTLSAST
SSPRAATAVLLPGLENLQPLASPSGPLALDSPQVLDSPLLPPLASPTRARSPDVISSAST
AMSQDMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNGLLPL
ELGGADGPVGGAVESEPRLSHTPSLLENALSQENPGVGGGSSDGSVSHTPWPAAPDITRE
TRNSLRDNGLGDCSREESNDRLLSSPYHRRSYHLTQSDSQDAGAEQSDPDDEVASLASSS
GNCGSRSSHRLPVKDWKTSPRGSPKLKRKAKKDDSESSQSRQMDSGQMNVEVQDELLMLL
RSQQRELTELRGQIEAMQSSIMAQVEHVLTNHQEQEQRRLERVLAESQNHQQQLQEQLSQ
QLSHALSSALTNRMDKVLREEMKKTVPQTISKSLEPVTGQLSNTIAAKLTAVEVTLKDNV
SKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGT
QEYIQQLETHMKNRKQREQETRDPMIGQLQQMIDSFQSSSDQMANNITANVRGEIQHQIQ
MMVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQ
ANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQL
SSNLATRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSLLSKRA
RRLMMMLQGLVNH
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaactccaatatagatatcgagggtgcgacccagcatctccgggatatcctc
aagctcgaccgtcccggcaatggcaccgatgcacaatcaagtgacggtgagagaaagcca
tcttttaatggagagttgaacgggttattgggaacagcaggcattctaggaagcactgat
cggtcaaccatgtcagactctactagacccatctccacagacatcagcactgctcaggag
agtcagataatctgcctctctggtgatgatgggtccacctgtatccccatcacctcgaac
aatgtggagattgtagcgagtcaggactccagcatcaacagcaaggctcgagggagcaac
aaggtgaagattcaaccagttgccaagtttgactgggaacacaagtattattatgggaga
ctgatagctgtgtccaactccttcctggcctatgccatcagaggagccaacaaccacgca
atgattcgtgtcctgagtctggcttttgctgagcgctccctactgaagggattcactggg
gccgtcacagatctggcttttgcccaccttgactcctccctgttgggttgtgtagatgaa
gcgggcaacttaatggtttggcaactcacctgcactggaaacaagatactagatcagatg
gtggttcacatcaaacgaccagaagacactccactgaactcccatcgtcgcctcatctgg
tgtccattcatcctggatgacaacgaggagaaccaggatgacaccagccagaccttggcc
cttctacacgaagacagggctgaggtgtgggacctggaagtgttgagagccaacaacagc
agttggcctattgatgccacggacctgaaggaaggcctaatcacagtaaaaggacatacc
cagcgagtcagtgaaggggccttgtctccagatggaactgtgttagccacagccagccat
gatggatacatcaagttctggcagatatatatagaaggtgtacaggacaagcccagatgt
ctccatgaattgcggcctcatgggggacgacccctctcttgccttcttttctgtgacaac
cacaagaggcaggatccagaggttcctttctggcggttcctcataactggagcagatcag
aaccaggagttgaagatgtggtgcactgtttcctggacctgtttacagaccatcaggttc
tctccagatccgttcaactcatcagctctaccaagtctgaaggctagtctggacctctct
gctgagtatctcatcctcaccgatgtacagaggaaggttctgtatgtgatggagctgcgg
caggatctggagaaagggaaggccagtttcacagctgtgtcagagttcctgctgacccac
cctgtgctcagcttcggggtccgggatgtcacccacagccgactgcgacacactgaggtt
ctccctgcagaggaggagagtgagagcatgaccacagagggcactcaaggacccacagag
tccaagtctgggatccagattaaactctactgtgttcacaccaagagtctgcaggatgtc
cagatctggtttcagcccactatggggtccagctctgcagtcttcctgcctcattctgat
tctcaggatggttttgcagggttttcagaccatctcactgaccagagctctgacaaggac
tcaggaagtggctcacagaccgacctaaggaagatcccatctcttcctgctcctgctgat
ttcctgtcgaactctacccctggtagtgggccaatgcccaagctgatgactcctgacgcc
ttcatgacaccaagcacttcggtaccggcatctcctggcagcagtgccagcagtctgacc
attgtaacagctatcagcagcaattctgactcaactaacagagctatagatgatgtcagt
cagagtcctaacagagcagagaacaacagcagcagtagtctgacactctctgcctccacc
agcagccccagagctgccactgctgtgctgctgcctggtctggagaacttacagcctttg
gcgtcccctagcggtcctcttgcacttgacagccctcaggtcttggactctcccctccta
ccaccactggcctctccaaccagggcccgctcccctgatgttatctcttcagcctccaca
gccatgtcccaggacatgccagagattgcatcccaaaccctgcagcttcagcgtggatta
gtgtccagcttggagcccctaccactgtctgctctccagacagacagcatggcctctgct
gcctctgcgctgcacctgctcacgtcaccacgcacagctaacaacggtctgttgcccctc
gaacttggaggggcagatggaccagtgggtggggcggtagagtcagagcccagactcagc
cacaccccatctttactggagaatgccttatcgcaggagaaccctggggtaggaggaggg
tcttcagatggtagtgttagccacacaccttggccagctgcacctgacatcaccagagaa
accaggaacagcctcagggacaatggtcttggagactgttcaagagaggagtcaaatgac
agactcttgagttcaccttaccatcggcgctcctatcacctcacacagagcgacagtcag
gacgctggtgcagagcagagcgaccccgatgatgaggtggccagcttggcatcgtcctcg
gggaactgcggctctcgctcttctcacagactccctgttaaggattggaagacttctccg
cgaggctcgccaaaactaaagaggaaggccaaaaaagatgacagtgaatcatctcagtcc
aggcaaatggactctggtcagatgaacgtagaagtacaggacgagttattgatgctcctg
cgtagccagcagagagagttgactgaactgcgtgggcaaattgaagccatgcagagctcc
attatggcccaggtcgagcacgtcctgaccaaccaccaggaacaggaacagcgcagactg
gagcgagttctggcagagagtcagaatcatcagcagcagcttcaggagcagctcagccag
cagctcagccacgccctcagctcagccctcaccaacagaatggacaaagtgctgcgagag
gaaatgaagaaaacagtcccacaaacgatctctaagagcctggagcctgtgacgggtcag
ctgagcaacacaattgctgccaagctgactgctgtggaggtcaccctaaaggacaatgtc
agcaaggtggtcaaatccaagaacacaacagatgcaattggccgagcagcagctgaagcg
atgcaggggcccatccaggcagcctataaagatgccttccagagcatcgtgctgcctgtt
tttgagagaggctgccagtccatgttccagcaaatcaatgacagcttcaaacaaggaaca
caagaatacatccagcagcttgagactcatatgaagaacagaaagcagagagagcaggag
acacgagaccccatgattggccagctccaacagatgattgacagcttccaaagctccagt
gatcagatggccaataatatcacagcaaatgtccggggagagatccagcaccagatccag
atgatggtgggaaatttgcaggagtctattcttagccacgtgcaacgaattgtcaaaggg
gaggtgagtctggcaatgaaggagcagcaggcagtggtcacctccagcatcatgcaggca
atgaggtcagcggctggcacacccgtccccacagcacacctagactaccagacacagcag
gccaacatcctgcagctcctccagcagggccagcttaaccaggctttccagcaggctctg
tcagcaacagatctgaacttggtgttgtatgtgtgcgagaccattgactctcagcaggtg
tttggtcagcacccctgccctctcagccagcccgtgctgctgtcgctcatccagcagctc
tcctccaacctcgcaacccgctctgagcttaaaatcagttacctggaggatgcagtgatg
aatctggaccacggcgacccgctgacaagagaccacatgtcctccgtgctggcccaggtc
agaccgaagctctttgccttcctgcagcaggacccccacagcctgctcagcaagagggcg
cggcgcctgatgatgatgctgcagggtcttgtcaaccactag
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integrated database retrieval system
