Seriola dumerili (greater amberjack): 111225342
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Entry
111225342 CDS
T05606
Symbol
hif1a
Name
(RefSeq) LOW QUALITY PROTEIN: hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04137
Mitophagy - animal
sdu04140
Autophagy - animal
sdu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111225342 (hif1a)
04137 Mitophagy - animal
111225342 (hif1a)
04148 Efferocytosis
111225342 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdu03000
]
111225342 (hif1a)
Transcription factors [BR:
sdu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
111225342 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
FAM176
TMEM51
Saf4_Yju2
CCD97-like_C
PAS_2
Ig-CFAP74_2
SPG4
Motif
Other DBs
NCBI-GeneID:
111225342
NCBI-ProteinID:
XP_022605871
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MDTGIVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LTISYLRMRKLLSTDDPMAEEETELDIQLNSSYLKALEGFLMVLSEDGDIIYLSENVNKC
LGLAQFDLTGHSVFDFTHPCDQEELREMLVHRTGSKKTKEPNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVYDTHTEQTTNGHKEPPVPYLVLICDPIPHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYEPEDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSLEQTEDV
KPXKEQQQQQQQQQMQQQEEEEKEEEEEEEEEKAAVQNSVPDMSPTLLKEEEEKTPELDV
IKLFTQAGEARPLASLYDQLKEEPEALTLLAPAAGDTIISLDFSCPDSEIQLPKEVPLYN
DVMLPSSSERLALPLSPLPTSEPLHVTITTTTTTTTSEDAKSESYAPAPSTISTSHSSSE
ADSPLDFCFPMDSDMSADFKLDLVEKLFAIDTEPKTPFTTQAMEDLDLEMLAPYIPMDDD
FQLRSLTQEEPLSCGPVKSLKSSPVHVTQDVSSYPSSPFSTPGSRTASPAPPEPVNAPHL
ATILAKRTPQLDKEVSLRTLAAQNAQRKRKLGDLKEIIGQGSLPEEQVEQGKKLKASESG
TTRTILLLPSDLASRLLGSTSEGTNTLFTLPQLTRYDCEVNAPLQGRQYLLQGEELLRAL
DHVN
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtacccgaaaagaaaagagtgagctcggagcggaggaaggagaag
tccagggatgcagcgcgatgtcggcgtgggaaggagtcggaagtgttctacgagctggcc
cagcagctgcccctgccccacagtgtcagctccagcctggataaggcctccatcatgagg
ctcaccatcagctacctgcgcatgaggaagctgctcagcactgatgacccaatggcagag
gaggaaacagagctggatatccagctaaacagctcctaccttaaggccttggaaggcttt
ctcatggtgctgtctgaggacggagatataatctatctctctgagaatgtcaacaagtgc
ctcgggctggcacagtttgacctgactggacacagcgtgtttgatttcacacatccctgt
gaccaggaggagctgagggagatgttggtccacagaacaggctccaaaaagaccaaggaa
ccaaacacagagcgcagcttcttcctccgaatgaaatgtactctgacaagcaggggccga
actgtcaatgtcaagtcagcaacttggaaggttctccactgctcaggtcacgtgcgtgtt
tatgacacccacactgagcagactaccaacgggcacaaggagccacctgtcccctacctg
gttttgatctgtgaccccatcccacacccctccaacattgaggtccctctggacaccaag
acctttctcagccgccacacaatggacatgaagttcacgtattgtgacgagaggatcact
gagctcatgggttatgagccagaggacctgttgaatcgttctgtgtatgagtactatcac
gctctggactctgaccatcttaccaagactcaccataacttgttcgcaaagggccaggtc
agcacaggacagtaccggatgttggccaagagaggaggctttgtgtgggtggaaacccaa
gccactgtcatctataacaacaagaactcccagccacagtgtgttgtctgtgtcaacttt
gtgctcagcggcatccaggaggagaaactgatcttgtctctggagcagactgaggatgtg
aagccatagaaggagcagcagcagcagcagcagcagcagcagatgcagcagcaggaggaa
gaggaaaaggaggaggaggaggaggaggaagaagagaaagctgcagttcagaacagcgtg
cctgacatgtctccaaccttgctgaaggaggaggaggagaagactccagagctggatgtg
atcaaactgttcacccaggcgggagaggcccggccgctggctagcctgtatgaccagctg
aaagaagagcctgaggccctcaccctgctggccccggccgccggagacacaatcatttcc
ctggacttcagctgccctgattcagaaatccagctaccaaaggaggtccctctctataat
gatgtaatgctaccctcctccagtgagaggctggctctgcccctttcaccgctgccgacc
agcgagcctctccatgtcaccatcaccaccaccaccaccaccaccacctctgaggatgca
aaatctgagagctatgctccagctccgtccactatatcgaccagccacagctcctcagag
gctgacagtccattggacttttgtttccccatggactcagatatgagcgcagacttcaag
ctagacttggtggagaagctgtttgccatcgatacggagcccaagacccccttcaccaca
caggcaatggaggacttagatctggaaatgttagctccctacattcccatggacgatgac
ttccagctgcgcagtctgacccaagaagagcctctgtcttgtggaccagtcaaatccctc
aaaagctctccagtccatgtcacacaagatgtcagcagctatcccagctccccattcagc
acaccaggcagtcgcacagcttccccggcaccacctgagcctgtaaacgcccctcatctt
gccaccatccttgctaagaggacaccacagttggacaaagaagtttcactcaggaccttg
gcagctcagaacgcacagcgcaaaagaaaactgggtgacttaaaggagattattggacag
ggaagtttgcctgaggaacaagtggagcagggcaaaaagctgaaggcctctgagtcagga
acaaccaggaccatacttctgctgccttcagatttggcaagtcgactgctgggcagcaca
tcagagggcaccaatactctctttaccctgccacagctcacccgctacgactgcgaggtc
aacgcccccttgcaaggccgtcagtacctgctgcagggggaggagctgctgcgcgcactg
gaccacgtcaactga
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