KEGG   Seriola dumerili (greater amberjack): 111225619
Entry
111225619         CDS       T05606                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03082  ATP-dependent chromatin remodeling
sdu03083  Polycomb repressive complex
sdu04110  Cell cycle
sdu04330  Notch signaling pathway
sdu04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111225619
   03083 Polycomb repressive complex
    111225619
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    111225619
   04350 TGF-beta signaling pathway
    111225619
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    111225619
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sdu03036]
    111225619
Enzymes [BR:sdu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     111225619
Chromosome and associated proteins [BR:sdu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     111225619
   HDAC complexes
    Sin3A-HDAC complex
     111225619
    BRAF-HDAC complex
     111225619
    REST complex
     111225619
    SHIP complex
     111225619
    MiDAC complex
     111225619
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     111225619
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111225619
  Chromatin remodeling factors
   NuRD complex
    111225619
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 111225619
NCBI-ProteinID: XP_022606319
LinkDB
Position
Unknown
AA seq 490 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKAKRAKTEGEKEGEEKEKKGEEETKEVKEEEKVPEEEKMDT
SKPKEESKTP
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcgcttacttctcaaggaacaaagaaaaaagtttgctactactatgatggtgatgtt
ggaaattactactatggtcaggggcatcccatgaagccccaccgaatccgcatgacacac
aacctgttgctcaactatggcctctacagaaagatggagatataccgtccgcacaaagcc
agtggagaggagatgaccaagtatcacagtgacgactacatcaaattcctgcgttcaatc
cggccagacaacatgtcagagtacagcaaacaaatgcagagatttaatgtgggggaggac
tgtccagtgtttgatggtttatttgagttctgccagctctcagcagggggttctgttgct
ggtgccgtgaagttgaacaaacagcagacagacattgctatcaactgggctgggggtctg
catcacgccaagaagtctgaggcttctgggttttgctacgtcaatgacattgtactggct
attctggaattactgaaataccaccagagagttctgtacatagatattgacatccatcat
ggggacggtgttgaggaggccttctacaccacagaccgcgttatgacagtttccttccac
aaatatggagagtacttccccggcacgggcgatttgagggacatcggtgctgggaagggt
aaatattatgctgtgaattatccactgagggatgggattgatgatgagtcatatgaagcc
atattcaaacccatcatggccaaggtgatggagatgtaccagcccagtgcagtggttctg
cagtgcggagctgattctttgtcaggagacaggctcggctgctttaacctcaccattaaa
ggtcatgccaagtgtgtggagtacatgaagagctttaacctgccactgctgatgctgggt
ggaggaggctacactatccgtaatgtggcacgctgctggacatatgaaactgctgtagcc
cttgattcctccatccctaatgagctcccatacaatgactactttgaatactttggaccg
gacttcaagctgcacatcagcccctccaacatgaccaaccagaacaccaacgactacctg
gaaaagatcaagcaacgcttgtttgagaacttgcgtatgctgcctcacgctccgggagtt
cagatgcaggccatccctgaagatgctgtgcaggaggacagtggcgacgaggaggaagat
gaccccaacaaacgcatctccatccgtgcccacgacaagaggatagcttgtgaggaggag
ttctctgactcagaggatgaaggtgaaggcggccgcagaaatgcagccagcttcaagaaa
gccaagcgagccaaaaccgaaggagagaaagagggagaagaaaaggagaagaaaggtgag
gaggaaacaaaagaagtaaaagaagaggagaaggtgccagaggaggagaaaatggacaca
tcaaagccaaaagaggaatccaagacaccttga

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