Seriola dumerili (greater amberjack): 111225735
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Entry
111225735 CDS
T05606
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111225735 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111225735 (cpsf3)
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111225735 (cpsf3)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111225735 (cpsf3)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111225735 (cpsf3)
U7-dependent histone pre-mRNA processing factors
111225735 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
111225735
NCBI-ProteinID:
XP_022606477
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKVEVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELSMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKLFKNIILIQEAGMVLLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSAIMDMDVFHTRLEVMLQDMFGEECVDFRDGKNISVTVDGKTVHICLETRSVC
YEDECTEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgcaaagtagaggtgattgtcccagctgaggagagtgaccagcttctt
attcgtccgctaggtgctggtcaggaggtcggaaggtcatgcatcatcctggagttcaaa
ggaaggaaaattatgctggactgtggcatccaccctggcttggagggaatggacgctctc
ccctacatagacttgatcgacccagcggagatagacctgctgctcatcagccattttcat
ctggatcactgtggagctctgccatggttcctccagaagaccagctttaaaggcaggacg
ttcatgacccacgccactaaggctatctaccgctggctactgtcggactacgtcaaagtc
agcaacatttctgcagacgacatgctttacactgagacagacctggaagagagcatggat
aagattgagaccatcaacttccacgaggtcaaagaggtcgctggaatcaagttctggtgt
taccacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtcaag
ctgctgtacacaggagacttctcccgacaagaagacaggcatctgatggcagctgagatc
cccagtgtcaaacctgacatcttaatcatagagtcaacttatggcacccacattcatgaa
aagagggaggaacgtgaagctcggttctgtaacacagtccatgacattgtcaacagagaa
ggtcgctgtttaatccctgtgttcgccttaggacgggcccaagaactgctgctcatcctg
gatgagtactggcaaaaccacccagagctgcacgacatccccatctactatgcttcatcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaacgcaatgaacgacaagatc
cgcaaggccataaatatcaacaatccttttgtcttcaagcacatcagcaacctcaagagc
atggatcatttcgatgacatcggtcccagtgtggtgatggcgtctccaggtatgatgcag
agtggactctccagagagctctttgagagctggtgcactgataagaggaacggagtcatc
atcgctggatactgtgtggagggcacactggccaagcacatcatgtctgagccggaggag
atcaccaccatgtcgggacagaagctgcagctgaagatgtcagtggactacatctccttc
tctgcccacacagactaccagcagaccagcgagttcatcagggcactcaaaccaccacat
gtgatcctggtccatggagagcaaaatgagatggcccgtctgaaggctgcactgatcagg
gagtatgaggataatgaccaggttcacatcgaagtccacaaccctcgcaacacagaagcg
gtcaccctcaacttcagaggagagaaactggccaaggtgatgggctctctggctgataag
aagtgtgctcagggtcagagggtgtcgggcatactggtgaagaagaacttcaactaccac
atcctcaatccctctgacctatccacatacacggagctgtccatgagcacagtgaaacag
acccaggccatccccttcactggaccttactcactgctcgtctgccatctgaggaacctc
actggggatgttgaagagctggatggaaccgagaagaacactttgaagctctttaaaaat
atcattctgatccaagaggctggcatggtgctgctggagtggatagctaaccctctgaat
gacatgtatgctgatgctgtcaccacagtagtgctggaagtccagtcgaacccaaaggct
cagaaagtcatggagacccagagtgccattatggacatggacgtctttcatacccgacta
gaggtcatgctgcaggacatgtttggagaggaatgtgtggatttcagggatggtaaaaat
atctctgtgacagtagatgggaagacagttcacatctgcttggaaacgaggtctgtgtgc
tacgaggatgaatgcacagaggacgactctctgagagagatggtggagctggcagtgcag
cggctctatgacgccctcaacccagtcatctga
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integrated database retrieval system
