Seriola dumerili (greater amberjack): 111226432
Help
Entry
111226432 CDS
T05606
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111226432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111226432
Enzymes [BR:
sdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111226432
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111226432
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111226432
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
111226432
NCBI-ProteinID:
XP_022607295
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRKPLFPLGSVPTEQPPAR
SWISLQEPDRSRASALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILGCN
ADIISLQEVETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKF
SAVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEVSSGKSLHGMEK
QLLLVANAHMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCA
DLNSLPDSGVVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKNSTSNGRITHGFKLKSA
YENGLMPYTNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDH
FSLFAQLELLLPNVPPQVNGLHLPARR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtacacaattatgtccagc
gaggaggcagccaacgggaagaagtcatactgggctgagctggaaattagcggccgagta
aggagtctcagcacagccctgtggtctctcacccacctcactgccctgcacctcagtgac
aactctttgtcacgcatcccgccagacattgccaaattacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacctgatggcacgcggagactgctcaactacttgttagacaatctggcaggggct
atcaagcgcaaacccctttttcccctcggctcagtaccaacagagcaacccccagcccgg
tcatggatctcactccaggaaccagaccgatcacgggcctcagcactgttctctgtgatg
tgctacaatgtgctgtgtgataagtacgccacacgacagctatatggttactgtccctct
tgggctctaaactgggaatacaggaagaaatccatcatgcaggagatcctgggctgcaac
gcagacatcatcagtttgcaggaagttgagacagagcagtactacaatttcttcttgcct
gaactgaaagagcagggatatgacgggttcttcagtccaaagtcacgagctaggactatg
tcagagtcggaccgtaaacacgtagacggatgtgcaattttctacaagacggaaaagttc
agtgcagtgcagaagcacacagtggagttcaaccagctggccatggctaactccgagggc
tcagaggctatgctgaacagggtgatgaccaaggacaacattggggtagctgtactactt
gaggtccgcaaagaaatgatggaggtctcctctggaaagtcactccacggcatggagaag
cagctgctcctggtagccaatgctcacatgcactgggacccagagtactctgacgtcaag
ctggtccagaccatgatgttcctgtcagaggtgaagaacatagtggacaaggccacacgc
agcctcaaattgtcctctgtctctggtgagaccaatgccattccactggtgctgtgcgct
gacctcaactccttgcctgactctggcgtagtggagtacctgagtactggcggagtggac
tgcactcacaaggacttcaaggagcttcgttatagcgacagcctgaccaaattcaactgc
aatggcaaaaacagcacgtccaacggcaggatcacccatggcttcaagctgaagagcgcc
tacgagaacggcctgatgccttacaccaactacaccttcgacttcaagggtgtcattgac
tatattttctactccaagcctcacctgaacgtgctgggtatcttgggccccctggacccc
cactggcttgtagagaacaatgtcagcggctgcccacatccccacatcccctccgaccac
ttctccctcttcgcccagctggagctgctcctgcccaatgtgcccccccaggtcaatggg
cttcatttgcctgcacgcaggtag
DBGET
integrated database retrieval system
