Seriola dumerili (greater amberjack): 111226553
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Entry
111226553 CDS
T05606
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111226553 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111226553 (polr1a)
Enzymes [BR:
sdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111226553 (polr1a)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111226553 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
CDC45
HMG_box_2
DUF720
Nop14
Motif
Other DBs
NCBI-GeneID:
111226553
NCBI-ProteinID:
XP_022607475
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MLFGKDVPWRRLEGMSFGMYSAEEIRKLSVKAITNSRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNSCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAAIHLL
LNQLKLVDHGAMQEVYQIEQVLSQYLEENPKASGDEIEQVLKEFTDTVLGVNAEDSESTK
PIKHLVEKKSSLINDFWRIHMKTRKCPWCRSGRFAVRREHNTKLIITMPSGVQTSESTDE
DLVAGKRVYLTASTAREHTSKLWEKEGFFLKCLFSGLEEATASKEGEKGFYPDLFFLELL
VVPPSRYRPVNRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKNTQEEEEAAEQTD
QSFLSGIPGQTLTDKLYNIWIRLQSHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKH
MMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVH
PGASMVINEDGRRTILSASSLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNR
QPTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYMLV
STDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKPGRVKLLP
PAILRPQQLWTGKQVVSTLLLNVIPRKAVPLNLVGKSKIPSKAWIQDPPRAAPGYKPDSM
CDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLY
RGFTLGVEDILVKPGANKQRKKIIQKSLTIGTKALQAAFNLPSNVDQAEAQSRWQDAHLN
PDQRDFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQI
SCLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGR
EGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL
QPRQFPFIEDNYEVIQRSQGLDKVLARLDPQTASQHFAAIQRWKAKRENAGPRRGAFLLF
SQKKLAKLKQTEQTTQSDVNGRNAVMLQVAQQWHSLDEASRLKYSRKSSRCPEPSLGSFR
PDVCFGSVSETFHDITEKYLQNRGSMSKDTLDTHSLRQLLYYKWQRSLCDPGEAVGLLAA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNTKKALK
RAKTLRKKLTRVCLAEVLQKVDVIESLRIENHQKLRTFKVAFHFLPPDRYSDDKLLSPQQ
ILHYMETRFFRLLLEAIKKRSAKLASIAVETRRATPRDKDLDGDGTADTAGLDDGEGEEE
REIVDDQGNEGDADASDAKRKGKQEEEVDYESEEGDRGDDGDDKEDQGEEEEEKNEEQNT
QEESLPESAGVRPEGKKKRAKRREGEATLSQMRVNSVLESNPAIEKYCYDHQHELWCEVY
LVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSETTKKTGEKETVLNTEGINMHEL
FKYSDILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYM
CFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKG
GTGLFELKQPLQ
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagatgtgccatggaggcgtttggagggcatgtcgtttggcatgtac
tctgccgaagagataaggaagttgagtgtgaaggcgatcactaactcaaggttcctggat
gcagttgggaatgtggccccaaacagcctgtatgatctggcactgggaccagcagataac
aaagaggtgtgttccacttgctgtcaggacttcaacagttgtccaggacacctggggcat
gtggagctacctctacctgtgtacaacccattgttctttgataaactctacctgttgatt
cgtggttcctgtctggcgtgtcacatgttaacgtgtccccgagctgccatccacctgctg
ctaaaccagcttaagttagtggaccatggtgccatgcaggaggtctaccagatagagcaa
gttctcagccagtacttggaggagaatcccaaagcctctggagatgagattgagcaggtg
cttaaagagtttacagacacagtactcggagtgaacgctgaagattcagagagcaccaaa
ccaattaaacatctcgttgaaaagaagagcagtctgataaatgacttctggaggatccac
atgaaaactaggaaatgtccatggtgcaggagtggcagatttgcagtgcgtcgtgagcac
aacaccaagctgattatcacaatgccgtcaggagtacagaccagtgaaagtactgatgaa
gatctggtggctgggaagagagtctacctgaccgctagtactgccagagaacacaccagc
aaactgtgggagaaagaaggtttcttcctgaagtgtctgttctctgggcttgaggaggcc
acggcatcaaaggagggagagaaaggtttctatcctgacctcttcttcctggagctgttg
gtggtcccaccttccaggtatcgtccagtcaatcgactgggtgaccagatgttcactaac
ggtcagacagtcaacatgcaggctgtcatgaaggactgtggaatcataaggaaacttctg
gctctgatagccggcgagaaaaacactcaggaagaagaagaggctgctgaacagacagac
cagtcgttcctgtcggggatccctgggcagacattgacagataaactctacaacatctgg
atccgactgcagagccacgtcaacatcgtctttgacagtgacatggacaaaatgatgaca
gaaaaataccctggaatcagacagatcttggagaagaaggacggattgttccggaaacat
atgatgggcaaacgagtggactatgctgcacgatctgtcatttgtccagacatgtacata
gggaccaacgagataggaatacctatggtgtttgccaccaagctgacctaccctcagccc
gtcactccgtggaatgtaaaggagctccgccaggccgttcttaatggaccgaacgttcac
cccggggcttccatggtgataaacgaggatggtaggagaaccatcttatcggcttccagc
ctcgcacagagagaagcggttgccaagcaactgctgacgccctgtcctggtccccataag
atgccaatgaagatagtgaatcgtcatataaagaatggagatgttttgttactcaacaga
caaccaactctgcacagaccctccatacaagctcattctgcccgcatcctcccaggagag
aaggttttaaggctccactatgccaactgcaaggcatacaatgctgactttgatggagac
gagatgaatgctcacttccctcagagtgagctgggcagagcggaggcctacatgttagtc
agcaccgaccagcagtacctcgtccccaaggatggtaaacctttagcagggctgatccag
gaccatatggtgtcagggacgagaatgacgatacgaggctgtttcttcacccgagaccag
tacactgagttggtgtacagaggactgaccgacaaaccaggcagagttaaactgctgccg
ccggccatactccgaccacagcagctgtggacaggaaagcaggtggtgtctacgctcctg
ctgaatgttatcccacggaaagcagtgcctctcaacctggttggcaaatcaaaaatcccc
agcaaagcgtggatccaggaccccccacgtgctgctccgggatacaaacctgacagcatg
tgtgactcacaggtggtgattcgccagggggagctgttggtgggggttttagacaaagct
cactatggctcctcagcctacggtctggtccactgctgctatgagctgtacggaggagag
accagcggcaaactgctcagctgtctggctcgactcttcactgcctacttgcagctatac
agaggcttcactctgggtgtggaggacattctggtgaaaccgggtgccaataagcagagg
aagaaaatcattcaaaaatcactaacgatcggcaccaaagccctccaggcagccttcaac
ctgccctccaacgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaac
ccagaccagagagacttcagcatggccgaccacaagttcaaagaagtggccaaccaagtg
aacaatgacatcaacaaggtgtgtatgcccatcggactccacacatctttcccagacaac
aaccttcagctgatggtccagtcaggtgccaagggatctactgttaacaccatgcagatt
tcgtgtctgctaggtcagatcgagttggagggccgtaggcctccactgatgccctctggg
aaattcttgccatgcttccaaccatatgaccctgcacctggggctggaggctttgtctct
ggaagattcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcaga
gaaggactggtcgacacagctgtgaaaacctctagatcaggatacctgcaaagatgtgtc
ataaagcatctggagggtttggtagtgcagtacgatctaacagtgagagacagcgatgga
tctgtggtccagttcctgtacggtgaagatgggctggatatccccaagactcagttcctg
cagccaagacaattccccttcatagaggacaactatgaggtcatccagaggtcccagggc
ctggacaaggttttggcacgtttggaccctcagaccgccagtcaacactttgcagccatc
cagcgctggaaagcaaagagagagaatgcaggtccacggagaggagcgttcctgttgttt
tcccagaagaagttggccaaactaaaacagactgagcaaacaacacagtcagatgtcaat
ggcagaaatgctgtcatgctgcaggttgcacagcagtggcactctctggatgaagctagc
agattaaaatacagcaggaagtcctctcgctgccctgagccctcgctcggctcgtttagg
ccagatgtctgcttcggatcagtgtctgaaacctttcatgacatcacagagaaatatctg
cagaacagaggcagcatgagtaaagacacgctagacacccacagccttcgccagctgttg
tactataaatggcagcgttcactgtgtgatccaggtgaagcggttggtctgctggcagct
cagtccataggtgagccctccacgcagatgaccctcaacaccttccactttgctggcaga
ggagagatgaacgtcactttgggaatacctcgactaagagagatcctgatggtggccagc
tccaacattaaaactcccatgatgagcgttccagtactgaacaccaagaaggccttgaag
agggccaagacgctccgtaagaaactcaccagggtgtgtctggctgaggtcctgcagaaa
gtggatgtgatagaatcactgaggattgaaaatcaccaaaagctgcggactttcaaggtc
gccttccacttcctgcctcctgaccgctactctgatgataagctactgtcgccccaacag
atcctccactacatggaaacaaggtttttccgtctcctcctggaggctatcaaaaagcgc
agcgccaagctggcctccatcgccgtggagacgaggagggccacccctagagataaagac
ctcgatggcgatggaacggctgacacagcagggttagatgacggggaaggagaagaggag
agagagattgttgatgaccaggggaacgaaggagatgcagacgcctcagacgccaagaga
aaaggcaaacaggaggaggaggtggactatgagagtgaagagggggatagaggtgatgac
ggcgatgataaagaagatcagggggaggaagaggaggagaagaatgaggagcagaacact
caggaagagtccctgccagagtctgcaggagtgagaccggaggggaagaagaaacgagca
aagagaagggaaggagaagcgaccttgagtcagatgagagtcaactctgttctagagtcc
aacccggcgatagagaaatactgctacgatcatcagcatgaactctggtgtgaggtttat
cttgtgttaccggtcagcaaggtgcactttgacctgacctcagtactgtcaacactggcc
cagaacgccgtcatcatggaaaccaaaggcctgactcgctgcctgctgagtgaaactaca
aaaaagactggagaaaaagagacggtcctcaacacagagggcatcaacatgcacgaattg
ttcaagtacagtgatatcttagacataaacaggctgtactccaatgaggtccatgccatg
gctaacacctatgggattgaagtggctctgaaggtcatagagaaggagatcaaagatgtc
tttgctgtctatggtatcgaggttgaccccagacatctgtctcttgtagcagactacatg
tgttttgaaggtgtatataagcccttaaaccgacatgccatcaggtccaactcctccccg
ctgcagcagatgaccttcgagaccagttacaaattcctcaaacaggcaaccatgctgggg
tcacacgatcagctggtgtcaccctcagcctgcctggtggtggggaaagttgtcaaaggt
ggaacagggctgtttgaactcaaacaacctctacagtag
DBGET
integrated database retrieval system
