Seriola dumerili (greater amberjack): 111227058
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Entry
111227058 CDS
T05606
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03030
DNA replication
sdu03410
Base excision repair
sdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111227058 (pole)
03410 Base excision repair
111227058 (pole)
03420 Nucleotide excision repair
111227058 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdu03032
]
111227058 (pole)
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111227058 (pole)
Enzymes [BR:
sdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
111227058 (pole)
DNA replication proteins [BR:
sdu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
111227058 (pole)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
111227058 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
111227058
NCBI-ProteinID:
XP_022608160
LinkDB
All DBs
Position
Unknown
AA seq
2267 aa
AA seq
DB search
MSALKRLERSQFTDEMDTRFGFDRMKEPGEKTGWLINMHPTEILDEDKRMISAVDFYFIQ
EDGNRFKVALPFKPYFYIATKKNCEREVISYLSKKFQGKMAKLEILPKEDLDLPNHLVGL
KRSYIKLSFNTVDDLVKVKREIAPAVRKNREREQSNDAYTSMLSSALSGGNVTSADEDGM
SKSISDQLDNIVDMREYDVPYHVRVSIDLKIHVAHWYNVRYRGSAYPPEIVRRDDLVERP
DPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGFLITNREIVSENIEDFEFTPKPE
YEGPFTVFNEDDEAALIQRWFDHVQETKPNIFVTYNGDFFDWPFVETRAALHGLSMHREI
GFQKDSQGEYKSSQAIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRM
ATEEPQTLATYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMV
QAFHANIVFPNKQEQVFNKLTDDGHVMDSETYVGGHVEALESGVFRSDIPCRFKMNPAAF
DFLLQRVERTMRHAIEEEEKIPLEQVTNFNEVCDEIKKKLTSLKEVPNRIECPLIYHLDV
GAMYPNIILTNRLQPSAMVDEATCAACDFNKPGATCQRRMTWQWRGEIMPASRSEFHRIQ
QQLESEKFPPLFPNGPPRAFHNLNREEQAKHEKKRLADYCKKAYKKTHVTRLEERVTTIC
QRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSSAQDSGDAAEAKRCKNMEILYESLQLA
HKCILNSFYGYVMRKGARWYSMEMAGIVCYTGANIITQARELIEQIGRPLELDTDGIWCV
LPNTFPENFVVKTSHEKKPKVTISYPGAMLNIMVKEGFTNDQYHELVDPASLTYTTRSEN
SIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQS
SVFEAFLKGTTLDEVYASVAKVADYWLDVLYSKAANMPDAELFDLISENRSMSRKLEDYG
EQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVISRKPEGSPVTERAIPLAIFQAEPSVKK
HFLRKWLKMPSLHDLDIRSILDWSYYIERLGSAIQKIITIPAALQQVKNPVPRVRHPDWL
HKKLLEKNDIYKQKKISELFTSEGKRQVAHQPLQAGQAADIEDFGMPAKPLQPAILISTK
RKRTSQGEDSQVESQDVELTQSWREILGPPPPMGKTREERLVWLRYHKKKWELQLRQRKE
RKKRRRLLDGEAQPVGGGVIRGGPTTGLGSFLRRTARSILDMPWQIVQIAETSHPGLYKL
WAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGATYKKVNRMLPRSNIVYYLYEYCVPEDMY
QEHINEINADLSAPDIEGVYETQVPLLFRALVQLGCVCMVNKYVVRDLAGREADTFDLEH
LEMRSLAQFSYLEPGSVRHMYLYHHRQGHKALFGLFIPSQRKASIFVLDTVRSNQMPNLS
NLYTAERTALLEKTTEELLPPEKHNFEVRAENDVKAIYRALQRILLNYKEERRGPTLIAV
QSNWELRRLAAGMPVLAEFPVVPVHVADEISYNVLDWQRHGARRMIRHYLNLDSCLSQAF
DMARYYHLPVGNLPQDVSIFGSDLFLARHLRKHNHLLWLSPTARPDLGGKEADDSRLVME
SDDRSSVEINAQGCYSTVCVEMDLQSLAVNTILQSQHVNDMEGGASLGVSFDVIQQASLE
DMMSGNQGATALASYDETALCSNTFRILKSMVVGWVREITQYHNVYADNQVMHFYRWLRS
PSSLLYDPALHRTLHNMMKKVFLQLVAEFKRLGSTVVYGNFNRIILCTKKRRIDNAIGYV
EYITNSIHSREIFHSLSLSFSRCWEFLLWMDPANYGGVKGKLPSSLLYGEEGTKQKKNRR
GDGDEDGSEDEDEDEADVEEEDGDGETDEVEELIESNWNIMQYLPQTASCQKYFLMIVSA
YIAAVYHSMKEELRRNAPGATPVKRRGGSQASQQAVGDLSALPGMISFSQEYVSSELTQN
FFTITQKIQKKVTGTRSVTQPSEMFPVLPGSHLPLNNPALEFIKYVCQVLSLDANIVNQV
NKLKRDLLRLVDVGEFSEDAQFRDPCNSYILPEVICHQCNFCRDLDLCKDPSVAQDGSVL
PQWFCSNCQAQYETESVEMALVEALQKKLMSYTLQDLVCTKCKGVKEANMPLYCGCAGDF
DLTFSAKRFSEQITVFRNIASHYNMSFLEETIDWLLAMSPQISQSAH
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctctcaagcggctggaacgcagccagttcaccgacgagatggacacccgcttc
ggcttcgacaggatgaaggagccgggggagaaaacgggctggctgatcaacatgcaccct
acagagatcctggatgaagacaagaggatgatcagtgctgtggacttttatttcattcag
gaggatggaaataggtttaaggtggctctccccttcaagccatatttttacatagccact
aaaaagaactgtgaaagagaagtcatctcatacctgtctaagaagttccaaggaaagatg
gcgaagcttgaaattctcccaaaagaggatctagacctgccaaaccatttagtcggactg
aagagaagctacatcaagctgtcgttcaacaccgtggacgaccttgtcaaagtaaagcgt
gagatcgccccagcagtacgcaaaaacagagagagggagcagtccaatgatgcctacact
tcaatgttatcaagcgccttatcgggtggcaacgtgacctctgcagatgaagacgggatg
tcaaagagtatttcagaccagttagacaacatagtggacatgagagagtatgacgtgccc
tatcatgtgcgagtgtccatcgacctgaagatccatgtggctcactggtacaatgttcga
tacagaggcagcgcttacccaccagagatcgtacggagagatgatcttgtggagcgacca
gaccctgttgttttggcttttgacattgagaccaccaaacttccactgaaattcccagac
gcagagacagaccagattatgatgatctcctacatgatagacggacaggggtttctaatc
acaaacagagagatcgtctcagagaacattgaggactttgagttcactcccaaacctgag
tacgaggggcctttcactgtcttcaatgaggatgatgaggcggccctcattcagaggtgg
tttgaccacgttcaagaaaccaagccaaacatctttgtgacttacaatggagacttcttt
gattggccttttgttgagactcgggctgcccttcatggtctgagcatgcacagggagatt
ggtttccagaaggatagccagggcgagtacaagtccagtcaggccatccacatggactgt
ttaaggtgggtaaaaagagacagctacctgccggtgggaagtcataatctgaaggcagca
gcgaaagctaaattgggctacgacccagtggagctggacccagaggagatgtgccgtatg
gcaacagaggagccacagactttagcaacctactctgtgtcagatgctgtggccacgtat
tacctgtacatgaaatatgttcatcccttcatcttcgctctgtgtaccatcatcccaatg
gagcctgatgaggtgctgcgtaaaggttcggggactctgtgtgaggccttgctcatggtg
caggccttccacgccaacatcgtcttccccaacaagcaggagcaggtcttcaacaaactg
acagacgacggccacgtcatggactctgagacctatgtgggcggccacgtggaggcgctg
gagtctggagtgtttcgcagtgacatcccctgccgtttcaaaatgaacccagctgcattc
gacttcctgctgcaaagagtagagaggacgatgcgccacgccattgaggaagaggagaaa
atccccttggagcaagtcacaaactttaatgaggtctgcgatgagataaagaagaagctg
acttccctgaaggaggttccaaacaggatcgaatgccccctcatctaccatctggacgtt
ggggcgatgtaccccaacatcattcttaccaaccgcctgcagccatctgcaatggttgat
gaagccacttgtgctgcctgtgactttaacaagcctggagccacctgccagaggaggatg
acctggcaatggagaggggaaatcatgcccgccagtcgcagtgagtttcaccgtatccag
caacaactcgagtctgagaagttcccgccgctgttcccaaacggaccgcctcgggccttc
cacaacctcaacagagaggagcaggccaaacatgagaagaaacgtttggcagactactgt
aagaaagcctataagaagacacacgtcaccaggctggaggaacgagtcaccaccatctgt
cagagagaaaactccttctatgtcgacactgtgagagctttcagagatcggcgatacgaa
ttcaaaggactccacaaggtgtggaagaagaagctgtcctcagctcaggacagcggagac
gccgctgaggcgaagcgctgcaagaacatggagatcctgtacgagtctcttcagctggct
cacaagtgtattctcaactctttctatggctacgtcatgaggaaaggggcgcgctggtac
tccatggagatggctggcattgtgtgctacactggagccaacatcatcactcaggccaga
gagcttatcgaacaaatagggaggcctcttgagttggacactgatggtatctggtgtgtc
ctccccaacacctttcctgagaactttgtggtgaagacgagtcacgagaagaagcccaag
gtgaccatctcctacccaggggccatgctgaacatcatggtgaaggagggattcaccaac
gaccagtaccacgagctcgtcgaccccgcgtccctcacttacaccaccaggtcagagaac
agcatcttcttcgaggtggacggcccgtatctggcgatgatcctccctgcctctaaagag
gaagggaagaagctgaagaaaaggtacgctgtgtttaatgaagatggatctcttgctgag
ctgaagggttttgaagtgaagagaagaggagagctccagctcattaagattttccagtca
tcagtgtttgaggctttcctcaaaggtaccactctggatgaggtctacgcctctgtggcc
aaagtggccgactactggctggacgttctatacagcaaggctgccaacatgccagatgcg
gagctgtttgacctgatttcagagaatcggtcaatgtccagaaagctggaggactacgga
gagcagaagtccacttctatcagcacagcgaagagacttgctgagtttctgggagaccag
atggtgaaagatgctggtctgagctgtcgctacgtcatctcccgaaaaccagagggttca
cctgtcacagaaagagccattcctctggccatcttccaggcagagcccagtgtcaagaaa
catttccttcgtaagtggttgaagatgcccagcctgcatgacttggacatccgctctata
cttgactggagttattacatagagaggttgggtagtgccatccagaaaatcatcaccatc
cctgcagctctgcaacaggtgaagaacccagtacccagagtgaggcatcccgactggctt
cacaagaaactcctggagaaaaatgacatttacaagcaaaagaaaattagtgagctgttc
accagtgagggaaagagacaggttgcccatcagcctcttcaagcaggccaagccgcagat
atagaggactttgggatgccggccaaacctctgcagccggccatcctcataagcaccaag
cggaagcggacttctcagggagaggacagccaggtggagtctcaggatgtggagctcacg
cagtcctggagagagatcctgggaccgcccccacctatgggaaagacacgggaggagcgt
cttgtgtggctgcgctaccataagaaaaagtgggagctgcagctgaggcagaggaaggag
agaaagaagaggaggaggctgctggatggggaagctcagcctgtaggtggaggagtgatc
agaggtggccccaccaccggcctgggaagcttccttcgcagaacagcgcgtagcatcctg
gacatgccatggcaaattgtgcagattgcagagactagtcaccccggtctgtacaagttg
tgggctgtgattgggaatgacctccactgcatgaagctcaacatcccccgtgtcttctac
gtcaatcagaaagtgccaaaacaagaggagggagccacatacaaaaaggtgaaccgcatg
ctgcctcgctccaacattgtgtactacctttatgagtactgtgtaccagaagacatgtac
caggagcacatcaatgagatcaacgcagacctctctgcaccagatattgaaggagtctat
gaaacacaggtccccttgctgtttcgtgctctggtgcagcttggatgtgtgtgtatggtc
aataaatatgttgtgagggatctggccggcagggaggctgacactttcgacctggagcat
ttggagatgaggtctctggcccagttcagctacttggagcccgggagtgttcgccacatg
tatttgtatcatcaccgccagggccacaaggctctgtttggcctgttcatcccctctcag
cgtaaagccagcatctttgtcctggacacagttcgaagcaaccagatgcccaacctgagt
aacctttacacagctgaacgcactgccctcctagagaagactacagaggagcttctgcct
ccagagaaacacaactttgaggtccgagctgaaaacgacgtgaaggctatctaccgtgca
ctgcagcgcatactgctaaactacaaggaggagcgtcgtgggcccaccctcatcgctgtg
cagtcaaactgggagttgcgacgattggcggcagggatgccggtgcttgcggagttcccg
gtcgttccagtacatgtggctgatgagatcagctataacgtgctggattggcaacgccac
ggtgcccggcgcatgatccgccactacctcaacctggacagctgcctgtcgcaggctttt
gacatggccaggtattaccacttacctgtggggaacttgcctcaggatgtgtccatcttt
ggttcagacttgttcctggcaagacatctacggaaacacaaccacctgctgtggctttca
cccacggccagacccgacctcggaggaaaagaggctgatgacagccgcctggtcatggaa
agtgatgacaggagctctgtggagatcaacgctcaaggatgctattccacagtgtgtgtg
gagatggacctgcagagcctggcggtgaacaccatcctccagtcacagcatgtcaatgac
atggagggcggagccagtctgggcgtcagttttgatgtgatccagcaggcctcgttggag
gacatgatgtcaggaaaccagggcgcgaccgctctcgctagctacgatgagacagctctc
tgctccaacaccttcaggatcttgaagagcatggtggttggatgggtcagggagatcact
cagtaccacaatgtgtatgcagacaaccaggtgatgcacttctaccgctggctgcgctca
ccgagctctctgctctatgaccccgcactgcaccgcaccctgcacaacatgatgaagaag
gtgtttctacagttggttgcagagttcaaacgtcttggctcaactgtggtgtatggaaac
ttcaacaggatcatcctgtgtacgaaaaaacggaggatagataatgccatcggctacgta
gaatacatcaccaacagcatccactccagagaaatcttccactctttgtccttgtccttc
tcccgatgctgggagttcctgctgtggatggaccccgccaactacggtggtgtgaagggc
aaactgccctccagcctcttgtatggagaggaaggaaccaaacagaagaaaaacagacga
ggtgacggcgatgaggatggcagcgaagatgaggatgaggatgaggccgacgttgaggaa
gaggatggtgatggagagacggatgaggtggaggagctgattgagagcaactggaacatc
atgcagtatctaccccaaactgcctcctgtcagaaatacttcctcatgattgtctcagcc
tacattgcagcagtctaccacagcatgaaagaggagctgagacgtaacgctcctggagca
acaccagtcaagagacgtggaggcagccaggcttcccagcaggcagtgggagacttgagt
gctcttcctggaatgatctccttctcccaggaatatgtgtcaagtgagctgacacagaac
tttttcaccatcactcaaaaaatccagaagaaggtgacgggcaccaggagtgtgacccag
ccctcagagatgttccccgtcctgcctggatcccacctgccactcaacaacccagcactg
gagtttattaaatatgtttgccaggtcctttcactggacgccaacatagtgaaccaggtg
aacaagctcaagagagacctcctgcgtctcgtggacgttggagagttttcggaggacgcc
cagttccgtgacccctgtaactcctacatcctaccggaagtcatctgccaccagtgcaat
ttctgtcgtgacctcgacctctgcaaggacccatctgtggcacaggatgggtctgtcttg
cctcagtggttctgctccaactgtcaggcccagtacgagactgagtctgttgagatggct
ctggtagaagccctgcagaagaaactgatgagctacacgctgcaggacctggtgtgtacc
aaatgtaaaggggtcaaggaagcaaacatgcccctctattgtggatgtgctggagacttt
gacctcactttctcagccaagcgcttctctgagcagatcaccgtttttcggaacatagcg
tcccactacaacatgagcttcctggaggagaccattgactggctgctggcaatgagccca
caaatcagccagagtgctcactaa
DBGET
integrated database retrieval system
