Seriola dumerili (greater amberjack): 111227409
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Entry
111227409 CDS
T05606
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111227409
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111227409
Spliceosome [BR:
sdu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111227409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
ResIII
KH_2
KH_PNO1_2nd
KH-I_KHDC4-BBP
CMS1
SNF2-rel_dom
KH_KhpA-B
Motif
Other DBs
NCBI-GeneID:
111227409
NCBI-ProteinID:
XP_022608579
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MSDWEEEYNEDGTAIQNPATKSVPVEWKSPCDDRQQGNISFGVRSGARFGASGEGRADRI
GQYKSRRGGGQGRALSPGSCGGPGRRPFLDEKSDSSQPVTITVENASVGRVIGRGGAKIR
ELEESTGARIKINKGDYEGEVVIFGSSAAQQKAKEMIEDLVADGSSRFHNGTKAREYGGV
GDGGTNGSVWSASAIQAANAAPARISIDWNSIRENKDKYEELKWKDLPPLKKKFYIEAEC
VSMLTAEEVSEWRKENNNIFVDDLKEGGEKRPIPNPCRTFLEAFELYPEIMENIERVGFV
KPTPIQSQAWPVLLSGEDLIAIAQTGTGKTLAYLLPGFIHMDGQPVPRAKRSGPGMLVLT
PTRELALQIETECNKYRYKGYKSVCIYGGGDRRGQINLVKGGVDIVIATPGRLNDLQMNE
LISLRSITYLVLDEADRMLDMGFEPQIMKILLDIRPDRQTVMTSATWPTGVRRLAKSYLK
NPMMVYVGTLDLAAVNTVQQTVLIVHEDEKKSYVFDFIRNMLPQDKVLIFVGKKLVADDL
SSDMCLQGLAVQSLHGDREQCDREEALKDFKESRVRILVATDLASRGLDVHDITHVFNYD
FPRNIEEYVHRVGRTGRAGRSGAAVTLVTRENWRMAPELIPILERAGQDVPEELVVMAER
YEKHKREKDMYNPRGGPGQGGGGGGG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactgggaagaggagtacaacgaggacggcaccgctatccagaaccctgccact
aaatcagttccggttgaatggaaatcaccgtgtgatgaccgtcaacagggaaatatatct
tttggtgtaagaagtggagccagatttggggcctcaggagaggggagagccgatcgtatt
ggccagtacaaaagccggagaggtggaggccaaggccgtgcgttatccccgggatcatgc
ggaggtccgggacgacggccctttcttgatgaaaagtcagactcttcccagcctgtaact
atcacagtggaaaatgcttcagtcgggagggttataggtcgcggaggagccaaaattcgt
gaacttgaagagagcacaggtgcgagaatcaagataaacaaaggagactatgaaggcgag
gtggtcatctttgggtcctctgctgctcagcagaaggccaaggagatgatcgaagacttg
gtggcagatggcagctctcgatttcacaatggtacaaaggcgagagagtatggaggagtc
ggtgatggaggaacgaatggctctgtctggtctgcttcagcaatacaggctgccaatgcc
gccccagcccgcatatccatagactggaacagcatccgggagaacaaggacaagtatgaa
gagctcaagtggaaggacctcccacccttgaagaagaagttttacattgaggcagagtgt
gtttccatgctcacagcagaggaagtcagtgaatggaggaaggagaataacaatatcttt
gtggatgacctgaaggagggaggggagaaacggcccatccccaatccctgtcgcactttc
ctggaggcctttgagctttatccagagatcatggaaaatattgaacgagttggctttgtc
aaaccaacccccatccagtctcaggcatggccagtgttgctgagcggggaggacctgata
gccatcgctcagacgggaacagggaaaaccctggcctacctgctgccagggttcatccac
atggacggacagcctgtacccagggctaagcgcagcggtccgggcatgttggtgctgact
cccaccagagagttggccctgcagattgaaactgagtgcaacaagtaccgttataagggc
tacaaaagtgtctgtatctatggcggaggggataggagaggccagatcaacctggtgaag
ggcggggtggacatagtgatcgccacaccaggccgacttaatgatctacagatgaacgag
ctcatcagtcttcgctccatcacctacttggtgctggacgaggctgatcgtatgctagat
atgggctttgaacctcagattatgaagattcttttggacatccgcccagaccgacagact
gtcatgaccagtgccacctggcccactggggtgagacgattggccaaatcctacctaaag
aatcccatgatggtttatgtcggcaccctggacttggcagcagttaacacagtgcagcaa
acagtgctgatcgtccatgaagatgagaaaaagtcctacgtgtttgacttcatcagaaac
atgctgccccaggataaagtcctcatctttgttggcaagaagcttgtggctgatgacctg
tccagtgacatgtgtctgcagggtctggctgtgcaaagtctccatggtgaccgtgagcag
tgtgaccgtgaggaagccctcaaggactttaaagagagtcgagttcgcatcctggtcgcc
acagacctggcatctcgagggttggatgtccatgacataacacatgtctttaactatgac
ttcccccgtaacatagaggagtacgtccatcgtgtgggccgcactggccgagctggacgt
tcaggtgcagctgttaccctggtaacaagagagaactggaggatggcccctgaactgatt
cccatcttggagcgagcaggacaggatgttcctgaggagctggtggtcatggcagagaga
tatgagaagcacaagagggagaaggatatgtacaacccacggggaggaccaggacaagga
gggggagggggaggtggg
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