Seriola dumerili (greater amberjack): 111228938
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Entry
111228938 CDS
T05606
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03013
Nucleocytoplasmic transport
sdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111228938
03015 mRNA surveillance pathway
111228938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111228938
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111228938
5.6.2.5 RNA 5'-3' helicase
111228938
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111228938
mRNA cycle factors
Common to processing body (P body) and stress granule
111228938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111228938
NCBI-ProteinID:
XP_022610775
UniProt:
A0A3B4UHY0
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTGPSPMTSMNI
PIPFNLVMPPIPPSGYMGQVNGPSAGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHGGG
NGGGDRGHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYL
GDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacgggccgagctcgcagactctaacgttcctggacaccgaagaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccctg
ccgagccagacccagacccaaggccagacccagagtcagctcgacagccaggttaatggt
cctgatggggtgctacagaatggagacgaccctgtagtaaaggccagtcagttgctggca
gagctgaactttgaggaggatgaggaggacacctactataccaaggaccttcctgtacat
gcctgcagttattgtgggattcatgatccagcctgtgtggtctactgcaataccagcaag
aagtggttttgtaatggccgtggaaacacatccggcagccatattgtaaaccacctggtg
agagcaaagtccaaggaggtgacactgcataaagacggccctctgggggaaacagtgctg
gagtgctacaactgtggctgtcgtaatgtcttcctgctgggcttcatccccgccaaggct
gactcagtagtggtgttgctgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcattcaggatcgctgcttcctgtcctgg
ctggtcaaaatcccctcagagcaggagcagctcagggcccgccagatcaccgcccagcag
atcaacaagctggaggagctctggaaggaaaatccaactgcgaccttggaggacctggag
aagcctggtgtggatgaggagccccaacacgtcctgctgcgatatgaggatgcctatcag
taccagaacatctttggtccccttgtgaagctggaagctgactatgataagaagctcaaa
gagtctcagactcaagacaacatcacggtcagatgggacttgggactgaataaaaagagg
attgcatatttcactctccccaagacggactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggggacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggtgatgagattgccatagagctgaggagcagtgccggggct
ccggtggagatcccacacaactttcaggtcgactttgtgtggaagtccacttcctttgac
agaatgcagagtgccctgaagacatttgctgtggacgagacctcagtgtctggttacatc
taccacaaactgctgggacatgaggttgaagatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgctcaaggcctgcctgatcttaaccactcccaggtgtatgctgtgaagacg
gtgctgcagcgtcccctcagtctgatccagggtcctcctggcacagggaagactgtaacc
tctgccaccattgtctaccacctggctagacagggcaacgggccagtgttggtgtgtgct
cccagtaacattgccgttgaccagctgacggagaagatccaccagacaggactcaaggtg
gtgaggctgtgtgccaagagcagggaagccattgactcacctgtgtccttcctggctttg
cacaaccagacccggaacatggacagtatgccagaacttcagaagctccagcagctgaag
gacgagactggcgagctgtcctcctcagatgagaagcgctaccgagctctgaggcgcaca
gctgagagggagctgctcatgaatgctgatgtgatctgttgtacctgtgttggtgccggg
gatcctcgtctggccaagatgcagttccgctcaatcctgatcgacgagagcactcaggca
actgaaccagagtgcatggtgcctgtcgtcctgggggccaagcagttgattttggtgggt
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctgggcatccggccaatccgtctgcaggtccag
taccgcatgcacccagccctcagcgccttcccctccaacatcttctatgaaggctctctg
cagaatggagtcactgctgcggaccgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaaaccgatgttcttttacgtcacacaaggccaagaggaaattgccagctctgga
acatcttacctgaacaggactgaggcagccaatgtggagaaaataaccacaaggttgctg
aaagctggagcgaaacctgatcagatcggcatcattaccccctacgagggacagaggtcg
tacctggtccaatacatgcagttcagtggctccctccataccaagctctatcaggaggtg
gagatagccagtgtggatgcctttcaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccaaggcatcggcttccttaatgatccccgacgtctaaatgtg
gcactgaccagggctaggtatggtgtgatcattgtgggaaaccctaaagccctgtccaag
cagcccctgtggaaccacctgctgaactactacaaggagcagaaggtcctggttgaaggc
cccctcaacaacttgagggagagcctcatgcagttcagcaagccacgcaaattggtcaac
accatcaatcctgggggtcgattcatgagcactgccatgtatgatgccagggaggccctc
attcctggatctgtttatgaccgcagcagcaatgggcgtatgtccaacatgtatttccag
actcatgaccagattggtatgattggcacaggccccagtcccatgacctccatgaacatc
cccatccccttcaaccttgtgatgcctcccattcctccctctggctacatgggacaggtg
aatgggccctcagcaggtcgtggtggaggtatgaagggcaaggcaggcagtggaggagga
ggcgggactcgaggtggccgtcaaagaaaccgtggcaacatggggaaccatggtggaggg
aacggaggaggggaccgcgggcatggaggacatatgagcggcagccaggccagccaggac
ctgggctctcagcccttctcccaagggcctctgacacagggctatatcaacatgagtcag
ccgtcacagatgagtcagcctgggctctcccagcctgaactctcccaggacagttaccta
ggagatgagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggg
gagcgggcctaccaacacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
