Seriola dumerili (greater amberjack): 111229096
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Entry
111229096 CDS
T05606
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04382
Cornified envelope formation
sdu04510
Focal adhesion
sdu04512
ECM-receptor interaction
sdu04518
Integrin signaling
sdu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111229096
04518 Integrin signaling
111229096
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111229096
09142 Cell motility
04820 Cytoskeleton in muscle cells
111229096
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111229096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdu04147
]
111229096
00536 Glycosaminoglycan binding proteins [BR:
sdu00536
]
111229096
Exosome [BR:
sdu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111229096
Glycosaminoglycan binding proteins [BR:
sdu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111229096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111229096
NCBI-ProteinID:
XP_022610991
LinkDB
All DBs
Position
Unknown
AA seq
1675 aa
AA seq
DB search
MGRPVPVVPLILFAVMLIGTGAKNCGKSRCRFEGVKGSRGDRGFPGDPGPPGAEGRPGSN
GHAGPKGPKGSTGLDGHVGPKGDLGPDGKEGFDGSHGLPGIPGLQGPPGPPGAPGCNGTD
GDDGHPGICGPSGIAGNPGPPGLPGLKGESWVLIDLIPGPPGPPGRNGDMGDPGFSGEPG
PLGEVGPRGSPGFPGLPGAPGSKGQEGLNGSPGHRGLKGRSGPPGPPGPPGRTREFSTES
LVLKRQQYIEDLKGDKGDVGEKGCQGEPGDIGYGLNTKGSKGGKGPQGPEGKPGKDGDPG
QYGQKGSPGHSGDPGYPGTPGDTGEKGSRGPPGPPGNIFGPEPLKGYRGDPGSSGPPGPP
GRRGIVGFPGPDGPPGQVSGNDVPGPRGSPGFPGPKGEPGEPGAIYTGLPGLDGDPGDTG
PQGDTGPPGPPEDRSMSNRITKGLPGMKGMKGTPGDRGYNGTFGKKGEKGEPCYDCIEAG
PPGIQGPRGPPGIPGKNQGPGAKGDPGILGPTGLTGRPGPVGVRGYPGPPGQKGDSYAYS
TPGIKGVTGDPGQLGWPGPDGRPGSPGLPGRKGNQGPPGDLDPYPGMTGDRGFPGPQGPL
GRPGPVGFPGQVGYGPAGLPGSKGDVGVPGLPGEPGIPGQKGEPSHIHTTGPPGPPGFKG
LPGLPGSPGYQGASGAPGIPGFPGQKGERGYVPLAGKQGIQGQKGEKGQPGLKGFPGRGL
PGQPGSPGPPGPPGLKGDGGHGIPGPPGLPGLPGEEGRQGPIGDPGTPGLPGKPGLIGNP
GYPGEKGNKGSIGPPGVPGSKDSCKGLPGPVGPPGPDGYPGLPGPNGLSGAKGNVGLPGS
GHPGPRGEPGSPGTSGPGSHGFPGLKGIKGQNGLPGQPGLRGNPGPEGLPGYGLEGLPGI
VGPPGQIGCPGPRGARGSQGPQGIKGEKGFRGPPGTTSTIPIDIIGPPGDNGNLGDPGLS
GVPGDTGSTGPKGLRGIHGAPGSPGLKGPPGDPGIDGSVFSEGRRGPAGTLGDPGVRGPQ
GLKGIRGDQGITGGPGQEGAPGPTGNKGVKGEPNYFGYGIPGPVGQKGEPGSTNTYTMKG
QKGEPGFHGPPGPPGDYGARGNPGPVGRSVPGLQGPKGSDGPPGDKGLPGPNGPPGVPGP
PGVGGYPGPKGNQGQDGIPGLPGQKGDTIIIGGTPGRRGDIGQQGPPGDPGPSGLPVTAS
PGPIGDRGLLGLPGVKGPRGLPGREGACSWLKGDRGHPGSPGNPGCPGSPGPPGPTVPGF
KGDRGDEGLIGSPGNRGLLGDPGPRGPPGVRGKPGGPGPRGDCGPPGFQGPPGEKGDPGY
NPGPPGLPGVKGFPGPPGLKGEPVFANGIFEPGFPGLPGPPGNRGAPGSTGPSGRPGLPG
KPGVKGVRGPSPHGQPGFPGHKGDKGNAGVPGPEGRLGDAGRKGPPGLPGGGGPHYVDSF
LIARHSQSIRVPDCPPGSSLIYSGYSLLFIKGNDKAHGQDLGTMGSCLARFSTMPFLFCD
TETTCRYASRNDYSYWLSTDTPMPNNMVSITGEKLASYISRCAVCETTSNVIAFHSQTIL
IPQCPKGWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYP
DSYSYWLASLDANNMFSKPAPQTVKGPSLQNVISRCRVCRKLSQPRSDDKRGDSF
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccagtgcctgtagttcctctgatcctgtttgctgtgatgctgattggcaca
ggagccaaaaattgtggaaaatcaaggtgccgctttgaaggagtgaaaggcagcagggga
gacagaggttttccaggagatccaggtcctccaggagcagagggccgtcctggatcaaat
ggtcatgctgggcctaagggaccaaagggcagcactgggcttgatggacatgtgggacca
aaaggcgatttgggacctgacggcaaagaaggatttgatgggtctcatggtttaccgggt
atcccaggtttacaaggacctccaggccctccaggggcaccaggatgcaatggaacagat
ggagacgatggacaccctggaatttgtggacccagtggtattgctggaaatccaggtcca
ccaggtctgcctggacttaagggtgaatcttgggtgttaatagatttaataccagggcca
cctggaccacctgggaggaatggagacatgggagacccaggtttcagtggagagcctgga
ccattaggcgaagttggaccaaggggctctcctggatttcctggccttccgggggctcca
ggatctaagggtcaagaaggcctcaacggttcaccaggacatcgtggactaaaggggaga
tcaggaccaccagggccaccagggccaccgggtcggaccagggagttttccactgaaagc
cttgtgttaaagaggcagcaatacatagaggatctaaaaggagacaaaggagatgtcgga
gaaaaaggctgccagggcgaaccaggagatattggttatggccttaacaccaaaggatca
aagggaggcaaaggacctcaggggccagaaggaaagccagggaaggatggtgatcctgga
caatatggacagaagggaagccctggccacagcggtgatccaggatatccagggacacca
ggagacacgggtgaaaaaggaagcaggggtccacctggtccacctggaaatatatttggg
cctgagccactcaaaggataccgcggagatcctggttccagtggcccacctggtccacct
gggcgtcgaggtattgtggggtttcctggaccagatggacctccaggccaagtgtctggg
aatgatgtgccaggcccacgaggttcccctggctttccgggtcccaaaggggagcctggg
gaacctggggctatttatactggactcccaggtctagatggggatcctggtgatacagga
cctcaaggggatacaggcccacctggacctccagaagacagaagtatgtctaacaggatt
acaaaaggtctcccaggaatgaagggaatgaagggtacacctggagataggggatataat
gggacatttggaaagaaaggagagaagggggaaccttgttatgactgcattgaagcagga
cccccaggaatacagggtccccgtggtccacctggcatccctggcaagaatcaaggacca
ggtgccaaaggtgatccaggcatcctaggacctacaggtttaactggaagaccaggtcct
gttggtgtaagaggatatccaggccctccaggacaaaagggagactcatatgcctacagc
actccagggataaagggagtgacaggagacccagggcagcttggctggcctggtccagat
ggccgccctgggtctcctgggttaccaggtcgtaaaggcaatcaaggccctccaggggat
ttggatccataccctggtatgacgggagaccgtggttttccaggcccacaagggccttta
gggagaccaggaccagttggcttccctgggcaagtgggatatgggcccgctggacttcca
ggaagtaagggagatgttggggtacctggcctgccaggggagcctggaattccaggccag
aaaggggaaccaagccatatccacaccactggacctcctggaccacctggatttaaaggc
ttgcctggtttacctggaagccccggttatcaaggagcatcaggtgcccctggaatacca
ggttttccaggacagaaaggagaaagaggttatgtgccacttgctggaaagcaggggatc
caaggacagaaaggtgaaaaagggcagccaggtctcaagggttttccaggtaggggcttg
cctggtcagccaggttcaccaggccctcctggtcctccaggactgaagggagatggtggc
cacggaatccctggccccccaggcctcccagggcttccaggagaagaaggacgtcagggc
cctataggagatcctgggacccctggtctacctgggaaaccagggctaattggcaaccct
ggttatccaggagaaaaaggaaataaaggttctatagggcccccaggagtacctggtagc
aaggattcatgtaaaggattacctggaccagtgggaccaccaggaccagatggttatcca
ggacttccaggacctaatggcttatctggtgcgaaggggaatgtaggtttgccagggtct
ggtcatcctggcccccgtggtgagcctggctcccctgggacatcaggccctggttcgcat
gggtttcctggactaaaagggatcaagggacaaaacggcctgcctggtcaaccaggattg
agaggaaaccctggaccagaaggattaccaggatatggactagagggattgcctggaatt
gtgggaccaccaggccaaataggttgccctggcccacgaggagccagaggttcccagggt
ccacaaggcataaaaggagaaaaaggtttcagaggtcctccaggcactacatcaacaata
ccaatagatattattgggcccccaggagacaatggcaatttgggtgaccctggtctgtcc
ggtgtccctggagatactggaagtactggaccaaaagggctgagagggatacacggagca
ccagggagtcctggactcaaaggtcctccaggggatccaggtattgatggatcagtgttt
tcagaaggaaggcgaggacctgctgggaccttaggagacccaggagtgagaggtcctcaa
ggcttaaaaggaataagaggagatcaaggaatcactggagggccaggtcaagagggtgca
ccaggtccaactggtaacaaaggagttaaaggagaaccaaactactttggatatggaatc
cctgggccagtaggacaaaagggtgaaccaggatcaaccaatacttacacgatgaagggt
caaaaaggagaacctggttttcatggaccaccaggtccaccaggagactatggagccaga
ggaaacccaggacctgttggcagaagtgtaccaggcctccaagggcctaaaggttcagat
ggacctccaggagacaaaggactcccgggacctaatggaccaccaggtgtcccaggtccg
ccgggtgtcggtggttatccaggtcctaaaggcaaccagggtcaagatgggatccctgga
ctaccagggcagaaaggggacacaatcataattggagggacacctggaagacgtggtgac
ataggtcaacaaggccctccaggggaccctggtccctctggcttgccagtcacagcaagt
cctggaccaataggagacagaggattgctaggtctacctggggtcaaaggtccaaggggt
ctaccaggaagagaaggggcatgttcttggttaaaaggagaccgtggccatcctggcagt
cctggtaacccaggatgtcctggctcacctggccctccaggtcccactgtgcctgggttt
aaaggagacagaggggacgaaggtcttataggaagcccaggcaatagaggactcctggga
gatccaggccctcgaggaccacctggtgtaagaggcaaacctggaggccctgggccaaga
ggtgattgtggtcctcctggattccaagggccccctggtgagaagggagaccctggatac
aacccaggcccacctggtctgcctggagtcaaaggttttcctggaccacctggcctcaaa
ggtgaaccagtatttgccaatggcatatttgaaccaggctttcctggcttaccaggtccc
cctggcaatcgaggagccccagggagcactggaccatcaggacgaccaggccttccaggt
aagccaggtgtcaaaggagtgcgtggtcccagtccacatggccagcccggatttcctggc
cacaaaggagacaaaggaaacgcaggagtgccaggtccagaaggtagacttggagacgca
ggccgaaagggtcctccagggttgcctggaggaggcggtccacattatgttgacagtttc
ctcatagctagacacagtcaaagcatccgtgtccctgactgccctcctggctccagcctc
atctactctggttactcgctccttttcatcaaaggaaatgataaagctcatggtcaggac
cttggcaccatgggaagctgtctcgctcgtttctccaccatgcccttcctgttctgtgac
acagaaactacctgtcgctatgcttctcgtaatgactactcatactggttgtcaacagac
acccctatgcccaataacatggtttccatcacaggggaaaagctggcctcctacatcagc
aggtgtgcagtgtgcgaaaccacctccaatgtcatagccttccacagccagacaattctg
atacctcaatgtcccaaaggttgggagtccctgtggactggatactcatttgttatgcaa
acaggtgctggtgcagagggctcctcgcagcctctggtttctcctggctcatgtctggaa
agtttccgccaagtgcccttcattgaatgtcacggcaggggaacatgtaactactaccct
gattcctatagctactggctggcctccctcgacgccaacaacatgttcagtaaacctgct
cctcagacagtgaagggaccttctctacaaaatgtaatcagccgttgtcgggtctgtagg
aaactatcgcagcctcgctcagatgacaagcgtggggacagtttttaa
DBGET
integrated database retrieval system
