Seriola dumerili (greater amberjack): 111229192
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Entry
111229192 CDS
T05606
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111229192 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111229192 (taf5)
03036 Chromosome and associated proteins [BR:
sdu03036
]
111229192 (taf5)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111229192 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
111229192 (taf5)
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111229192 (taf5)
STAGA complex
111229192 (taf5)
TFTC complex
111229192 (taf5)
SAGA complex
111229192 (taf5)
SLIK complex
111229192 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
LisH_PAC1
PROPPIN
CDK5RAP3
Beta-prop_ACSF4
VPS8_N
LisH_TPL
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
111229192
NCBI-ProteinID:
XP_022611125
UniProt:
A0A3B4VGG0
LinkDB
All DBs
Position
Unknown
AA seq
750 aa
AA seq
DB search
MAAVQGGLVDADEDKDIKTEPSSDGWGNNNANDGRLLSPSPGSSSSAGSNKTVAGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLELKGTDSSGAGSGGAAGSVDLEGGDAS
SLLSRVTISSSAGAQAPTKAAAGEDQPDVNVVLSAYSQQGDPALYQVYYSGLKRFIETVL
DCHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRVLSSLSKKE
HMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSK
SQIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDS
MGSKSKKQDPNAPSQNRIPLPELKDSDKLDKIMYMKEATKKIRLGPDNLPSICFYSFLNA
YQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMD
EKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW
DTQFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNYVATGSSDR
TIRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMVGELKG
HTDTIYSLRFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQELL
LGTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacagggtggtctggtcgacgcggatgaagataaagacataaaaacagaa
ccatcaagcgatggctggggaaataataatgcaaacgacgggagactgctctctccgtcg
ccgggctccagttcttcggctggaagcaacaaaactgtggcgggagctccggaggaccag
cagacgctgctggcagtcctgcagttcctcaggaagaacaagctgaccgagtccgtcgaa
attttgcgtcgtgaagcgggattacctgaggattcactggagctgaagggcactgattcc
tcaggggcaggttcgggaggtgctgcgggcagtgtggatttagaaggcggggatgcgagc
tctcttctcagccgggtgaccatttcatcctccgccggagctcaggcgccaacaaaagca
gcggctggggaggatcagccagatgtgaatgtggtgctgtccgcttacagccagcaggga
gacccggctctgtatcaggtttactacagcggcctgaagaggttcatagagacggttttg
gattgtcacagagcagagctgtcccaggtcttttacccgctgtttgtccacatgtatctg
gagttggtgtacaacaatcacgaaagtgaggccaaggctttctttgaaaagttcagtggg
gaccaggagtgctattatgaagatgacctgcgtgttttgtccagcctgtcaaagaaggaa
cacatgagaggcaacgagactctccttgacttccgcaccagcaaatttgtcctgcgcatc
tcccgtgattcttaccagctgctgaagagacacctgcaggagcgtcagaacaaccagatc
tggaatatcatccaagagcacctctacattgacatcttcgatggcatgccacgcagcaag
agccagatcgatgccatgtctggcagcttggctggagaggccaagagagaggccaataag
gcgaaggtttactacggattactgaaggaaccagaaattgagctgcctcttgatgatgag
gatgaggaagcagaaaatgaggagggtaaacccaagaagaagaaacccaaaaaggacagc
atgggctccaaaagcaagaagcaggatcctaatgcaccttcacagaataggatacctttg
ccagaactgaaggattcagacaagctggacaagatcatgtacatgaaggaggccaccaag
aagatccgcctgggaccagataacctcccctctatctgcttctactcttttctaaatgcg
taccagggtttgactgcagtggacttcacagatgactccagcctcattgcaggaggcttc
gctgactccacagtacgggtttggagcgtcacaccgaaaaagctccgcaaggtcaagtct
gcagcagacttgaatctgattgacaaagagtcagatgatgtgcttgagaggatcatggac
gagaagacagccagtgagtcaaagatcctctacggacacagcggcccggtgtatggcatc
agctttagcccagacagaaactacctgttgtcaagttctgaagacggtaccgtcaggctg
tggagtctccaaacatttacttgtctagtgggttacaaaggccataattaccctgtgtgg
gacacccagttttctccccatggctattattttatctccgggggacatgacagagttgcc
cgtctgtgggcgacggatcactaccagcctctacggatgttttctggtcatctagctgac
gtcacttgcacccgtttccaccccaactccaactatgtggccacagggtcgtctgaccgc
accatccgcctctgggacgtcctaaatggcaactgtgtccgcatattcaccggtcataag
ggtcctatccatgcgctggctttttctccgaatgggaagttcttggcttctggagccact
gatggcagagttcttctgtgggacatcggtcatggtctgatggttggagagctcaaaggc
cacacagataccatctattccctcaggttcagcagggatggcgagatccttgcctccggc
tccatggacaacacagttcgtctgtgggatgcaatgaaagcatttgatgatttagagact
gatgacttcacagcagccacaggacacattcatctacaagataactcccaggagcttctg
ttgggcacctacatgactaaatccacacctgtgatacaccttcacttcacccggagaaac
ctgctgctggccgcaggggcctacaatccataa
DBGET
integrated database retrieval system
