Seriola dumerili (greater amberjack): 111229207
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Entry
111229207 CDS
T05606
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111229207 (helz)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
111229207 (helz)
3'-5' decay
Other 3'-5' decay factors
111229207 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
PhoH
AAA_16
zf-CCCH_4
AAA_5
TPR_1
Motif
Other DBs
NCBI-GeneID:
111229207
NCBI-ProteinID:
XP_022611153
UniProt:
A0A3B4UB44
LinkDB
All DBs
Position
Unknown
AA seq
2061 aa
AA seq
DB search
MADRRAEKSCEEASRSLVRREYEAAVSHSTDALVVLVPQAPSSGTPVPPSPPSLTATGPL
RSRALLYRIAAFLQLKNYDEADEDCKHVLVEEIARGDGSLQASLRSMLLDGSLQEVASIL
SKALYGEPMNGIVAKDLTRLKMLLSEIEAINRDMAPEYTDDQEEEVQDGWQFRPPPRGVT
SSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYM
ETLIEKWMNSLSPEKVLSDCLEGVIVETSSSLSVTVTTKKSSHSWAFSLLCKPARKLYRI
ALLYDAHRPHFFITGVSAGERLQAVPKGCQEWTPGEDTALAADNGLDNCLYKVAVSFSTE
IFGTFRQTVVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLITAKRWDSSCKTIVEF
CPNETMAELERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEV
SKFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
LLPLGREGINSQPPPGVKERVYEAVIEEKTKEYIFLRICKDCCEELGLQPDREIQVELQF
QLNRLPLCEMHYALDRIKDNTILFPDVSLVPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPISIPLPPILIIGPYGTGKTFTLAQAVKHILRQDHSRVLICTHSNSAADLYIKDYLHP
YVEAGNPHARPLRVYFRNRWVKTVHPVVQQYCLISSTQVTFQMPTREDILRHRVVVVTLS
TSQYLCQLDLEPGLFTHILLDEAAQAMECETIMPFALASKTTRIVLAGDHMQLSPFVYSE
FARERNLHVSLLDRLYEHYPPEFPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQPS
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHE
NSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHHSSSQALHPHHHPHP
QHAQPATNKQGPQQQQQQQQQQSPPKGKHANHTEHLPPDGYVQPNPAVLMGNPIRAFTPP
LGGTAAGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPGYQNRFAVDPRI
MSHPAAMAYNFNLLQAQNRGSPIPYSGVGHPSPLGMGQPSPDKELQADPIRNGKLEGCPK
SEQSRLQTPERKTADMKEKQGDLDTGQGRSLDSQTDGLVGFPNALLHRKDPSAAQRPLNY
HLAPPNPAFPPHPASGRPFPPQYPVSRLPYRVGQPQHPGMAQQSQQQQQQLSPAYTGGSH
NASFFSGPIPPHRAVQSPTLDGPESGGLEEMSSSIRTPMGHPGGHHPGLSQHNRVNSFGE
DGQDGNLGDGLDLQGPLALEALSQQQQQAARLGQWGEAAGPFLPGNVAFPLPQQLAHLAQ
PGMARIPHQLLRAASWGLSANMEDEAVSSASTGPPYTRYPGLLREIPPQEQPEPREAAEM
QPPPQSRLLQYRQSQSRASGDPSSSLATTSNHAGPFPSGPYAHDAGRNLLNDNLLNNPAL
QQQHPGNPLYNTGSYPHQPPTHSASPPPSQVKYLLQEAQWSHGGAASVSPPQQNHLLGNQ
GHGLPYGLPIMAHPSRQEQVHLMQLHHQHQQQQQQQQQQQQQQQQHYQQQQQQQQQQHHQ
HQQSQGPDQESYHPLSPRTSAATALHNVDEYEPRGPGRPLYQRRISSSYPDEPSPANTHN
ALSQQSQPCTSDPQDHPHPHIQHHQHPHAHYVYPSHDPWPSNGGGPGPFQNIPCNGAGTL
AQHREILASKALRQTEEQVKAEATAAQQTHPHSLNSLQHLGQFPPLMPNNKQQQQQQQQQ
QQQQPPPPPPPPPQAPTEPNQGAPNLNKPPTMSYASALRAPPKPRAVRPEQVKKNSDPLS
LLQELRIGSSNGSNGYYSYFK
NT seq
6186 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcagatcgttagtcaggcgg
gagtacgaggcggcagtcagccacagcacggacgccctggtggtccttgtgccccaagcc
ccatcctccggtacccctgtcccgccgagccctccatcccttaccgccaccggacccctt
cgcagccgtgccctgctctaccgaattgctgccttcctgcagctgaaaaactatgatgaa
gcagatgaagactgcaaacatgtcctggtagaagagattgccaggggagacggttcacta
caggccagcttgcgctccatgctgttggatggcagcctgcaggaggtggccagcatcctc
tctaaagccttgtatggagagccaatgaacggcattgtcgcaaaagacctgaccagatta
aaaatgctcctctcagaaatagaggctataaatagggacatggcaccagaatatacagat
gaccaggaggaagaggttcaagatggctggcagttccggcctcctccccgaggagtcacc
agcagtgaggagtacaccctctgtaaaaggtacttggagcagggtctgtgtcggtacggg
gcccagtgcacgtcagcccactcgcaggaggagctgatggagtggcagaaacgctatgcg
tcacgcctcatccgcctcaaacagcagcaggagagcaagcacttcaccgaaaactacatg
gagaccctgatagagaagtggatgaactccctctccccagagaaagtgctaagtgactgt
ttagaaggagtgattgtagaaaccagctccagcctctctgttactgtcaccaccaaaaaa
tcctctcactcctgggccttctccttgttgtgcaagccggctagaaagctgtaccgcatc
gccctgctctatgatgcccaccgaccacatttcttcatcacaggcgtgtcagctggggag
cggctccaagctgttcccaaaggctgccaagagtggactccaggagaggacacagcattg
gcagccgacaatggcctggacaactgtctctacaaggttgcagtgagcttcagcacagag
atttttgggaccttccgacagactgttgtttttgacttcggttcggaacctgtgctgatg
cagcggatcatggttgatgcagcctctattgaagacctagaacatttgatggcagccagg
cagcagctcttgattactgcgaagcgctgggactcttcctgtaagaccatcgtagagttc
tgtcctaatgagacaatggctgaactggagcgcagcctcctttcccgctatcagatccct
ttgtcggccgaccagctcttcacccagtctgtcctggacaagactctgaccaaagacaac
taccaggcccgactgcatgacctgctctacatagaggagattgcacaatacaaggaagtt
agcaagtttaacatcaaagtgaacctccagctggttaccagctttatgctgactggcatt
tctgttggagccaagtatgcccagaatggacagctctttgcacgcttcaaactcactgaa
acactttctgaggacacgctggctggacggctagtgatgaccaaggtaaattcagtcctg
ctgctgcccttgggccgtgaggggatcaacagccagccgcctcctggggtcaaagagcgc
gtttacgaggctgtgatcgaggagaagacgaaggaatacatcttcctgaggatctgcaag
gactgctgtgaggagctggggctacagcctgacagagaaatacaggtggagctgcagttc
cagctgaacagactgccactctgtgagatgcactatgccctggatcgcatcaaagataac
accatccttttcccagacgttagccttgtccccacgatcccctggagccccaacaggcag
tgggatgagcagctggatccccgtctgaatgccaagcagaaagaggccatcctggccatc
accacacccatctctatccccctgcccccaatcctcatcattgggccctacggcaccggc
aagaccttcaccctggcacaggctgtcaaacacatcctccgccaggaccacagcagggtc
ctgatttgcacccactccaacagtgcggctgacctttacattaaggactaccttcatcct
tacgttgaagcgggcaatccacatgccagacctctcagggtatacttcaggaaccgctgg
gtgaagacagtccacccagtggtccagcagtactgtctcatctccagcacacaggtcact
ttccagatgcccacaagggaggacatcctcaggcaccgcgtggtggtggtcaccctcagc
acctcccaatacctctgccagcttgacttggagcccgggttgttcactcatatcctactg
gatgaagcggcccaggccatggagtgtgaaaccatcatgccttttgctctagctagcaag
accacccgcatcgtgctggctggggaccatatgcagctcagtccatttgtgtacagtgag
tttgcgcgggagcgtaacctgcacgtgtcactgctggaccgactgtatgagcactacccc
ccggaatttccctgtcgcatcctcctgtgcgaaaactaccgctcccatgaagctatcatc
aactacacatcagagttattttatgatgggaagttaatggcaagtgggaagcagccctcc
cataaggacttctaccctctgaccttcttcacagccagaggagaagatgtccaggagaag
aacagcactgcctattacaacaacgcggaggtatttgagattgtggagcgggtggaggag
ctgcgcaagaagtggccagtggcctgggggaagctggacgagggcagcattggcgtggtg
tcaccatatgctgaccaggtgttccgcattcgtgctgagctaagaaagaagagaatgcat
gaggtcagcgtggaaagagtgctcaatgtccaaggtaaacagttccgggtgctgttcctc
agcacggtgcggacacggcatacctgcaagcacaagcagacggccatcaagcgtaaagag
cagctagttgaggactcaacagaggaccttgactatggctttctctccaattacaagcta
ctcaacacggccattaccagagcccaatccctggttgcggtcgtgggagaccccatcgca
ctgtgctccgttgggcgctgcagaaaattctgggagcacttcatctccatctgccatgaa
aactcgagccttcatggcatcacctttgagcaaatcaaggctcagctggaggccctggag
ctcaagaagacctacgtcctcaacccactggccccagagttcatcccacgtgcgctaaga
cccttgcaagggcaccactcttcatcacaggccctccatcctcaccatcatccacatcct
cagcacgcacagcctgccaccaacaagcagggtccacagcagcagcagcagcaacagcag
cagcagtcaccccctaaggggaaacatgcaaaccacacagagcacctgccacctgacgga
tatgtccaacccaacccagccgtgctgatgggaaaccctattcgggcattcacaccaccc
ttgggtggcacagcagctggcatgggaaagtcacccagtcctgtgcagaggatagatcct
catacaggcgccagtatcctctacgttcccgccgtgtatggtggaaacatggtcatgtcc
atgcccctgccgttgccttggccaggttaccagaatcgctttgctgtggaccctcgcatc
atgagccaccctgcagccatggcctacaacttcaatctattgcaggcccagaatcgaggc
tcccccatcccttacagtggggtgggccacccctctcctctcggcatgggccagcctagc
cctgacaaggagctacaggcagaccccatcagaaatggtaaattagaaggatgtccaaag
tcagaacagagccgtcttcagacaccagagaggaaaaccgccgacatgaaggaaaaacag
ggagatttggacacagggcaaggtcgaagtctcgactcacagacagacgggctagttgga
tttcccaatgcgctgctccatcgaaaagacccctcagctgcccagagacccctcaactac
cacctggcaccacccaacccagcttttcctccacatcctgccagtggaagacccttcccc
ccacagtacccagtctccaggcttccttaccgggtcggccagcctcagcacccagggatg
gcccaacagagtcaacagcagcagcaacagctcagtcctgcctacactggtggtagccac
aacgcttccttcttcagtggccccataccacctcacagggctgtccagtctcccactttg
gatgggccagaatctggtgggctggaggagatgagtagctccattaggactccaatgggc
cacccaggaggccaccacccaggcctgtcacagcataacagggtcaatagctttggggag
gacggacaggatggaaacctgggagacggtctcgacctccagggtcccttggctctagag
gccctgagccagcagcagcagcaggcagccaggctgggccagtggggagaggcagcgggc
cctttcctcccaggcaatgtcgccttccctttgcctcaacagcttgcccaccttgctcag
cccggcatggctcgcatcccacatcaactgctccgggcagctagttggggcctcagtgcc
aatatggaggatgaagctgtttcttctgcctccactggaccaccttacaccaggtacccg
ggcctgttgagagagattcccccacaggaacagcctgaacccagggaagcagctgagatg
cagcccccacctcagtctcgtctcctccagtaccggcagtcccagtcccgtgcctcaggt
gacccctcatcctctttagccaccacctcgaatcatgctggccctttcccatcaggacct
tacgcccatgacgccggtcgcaacctccttaacgacaaccttctcaacaacccagctctg
cagcagcagcacccggggaaccccctatacaacactggtagctacccacatcagccacca
actcactctgccagcccccctccctcccaggtcaaataccttctgcaagaggcccagtgg
tcccatggtggagctgcatcggtgagcccaccacagcagaaccacctgttagggaaccag
ggccacggccttccttacggactgcccatcatggctcaccccagcagacaggagcaagtc
cacctgatgcaacttcaccatcagcaccagcagcagcagcagcagcagcagcagcagcag
cagcagcagcagcaacattatcaacagcagcagcagcagcagcagcagcagcaccaccaa
caccaacaaagtcaaggtccagaccaagagtcttaccacccactgtcccccagaacatca
gcagccacagcccttcacaatgtagatgagtatgaacccaggggtccaggtcggcctctc
tatcagcgccgcatctcctccagctacccagatgaaccgtctccagccaacacccacaat
gccctatcccagcagtcccagccctgtacgtcagacccccaggaccacccccatccacac
atacagcatcatcaacatcctcacgcccactacgtttatccctcacatgacccttggccc
agtaatggtgggggtcccggtccgttccagaacattccatgtaacggagccggcacactt
gctcagcaccgggaaattctggcttccaaagcccttcgtcagacagaggagcaggtgaag
gctgaggccacagcagcacagcagacgcacccacactccctcaactcccttcagcacctt
ggacagtttcctcctctcatgcccaataacaagcagcagcagcagcagcagcagcagcag
cagcagcagcagccgccaccaccaccgccgccgccaccacaggctcccacagagcccaac
cagggggcgccaaatttaaacaaaccacccaccatgtcgtatgcgagcgccctccgtgct
ccacccaagccccgagctgttcgccctgaacaggtcaaaaagaacagcgaccctctctcc
ctccttcaagagctgagaataggaagttcaaatggtagcaatgggtactattcctacttt
aaatga
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integrated database retrieval system
