KEGG   Seriola dumerili (greater amberjack): 111229306
Entry
111229306         CDS       T05606                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111229306 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdu03019]
    111229306 (exosc1)
Messenger RNA biogenesis [BR:sdu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111229306 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     111229306 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 111229306
NCBI-ProteinID: XP_022611308
UniProt: A0A3B4TD79
LinkDB
Position
Unknown
AA seq 194 aa
MSPMKLCVPGDKLCSIDDCIPGTGVYLRHGYIYSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHTKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaaactatgcagcatagacgactgtatt
ccaggcacaggagtatatctgcggcacggctacatatactcctcactagcaggctacgtg
ctcaagaaaaacgagggcgaggagttacctgtgatctcagtggtgagggaaacagaaaca
caactactgccagatgtaggagcaatagtcacctgtaaggtgaccagcatcaaccccagg
ttcgccaaggtccacatcctttatgtaggctccacgccgctgaaggaccgcttcagaggg
actatcagaaaagaagatgtgcgggcaacagagaaagacaaggtggagacatacaaaagc
ttcagacctggtgacatcgtcttggcgaaagtgatttctcttggtgacgttcagtctaac
tacctgttgacaacagcagagaatgagctgggagtcgtggtggcacacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgcccacggactcacaccaaagag
ttccgcaaagttgcgcgagtgcagccggagtatctacaggcatga

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