Seriola dumerili (greater amberjack): 111229477
Help
Entry
111229477 CDS
T05606
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdu03016
]
111229477 (rtcb)
Enzymes [BR:
sdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111229477 (rtcb)
Transfer RNA biogenesis [BR:
sdu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111229477 (rtcb)
Prokaryotic type
tRNA splicing ligases
111229477 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
111229477
NCBI-ProteinID:
XP_022611531
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKITSNCWRIKKGFVPNMRVEGNFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFNHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSEVFSTTPDDLDMHIIYDVSHNIAKVEE
HMVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagttacaacgatgagctgcagtacctggataaaatcaccagtaactgctgg
aggattaaaaagggatttgttcccaacatgagggttgaagggaatttctacgtcaacgat
tctctggagaagctgatgtttgaggagcttcgtaacgcctgtcgaggaggaggtgtgggc
ggtttccttccagccatgaagcagatcgggaacgtggcggcgctgcccgggatcatacat
agatccatcggcctcccagacgtccactctggatatgggtttgctatcggaaacatggcg
gccttcgacatgaatgaccctgaggctgtggtgtctccagggggcgtcggcttcgacatc
aactgtggcgtccgtctcctgaggacaaacctggacgagcgtgacgtgcagccggtgaag
gagcagctggcccagtccctgttcaaccacatcccagtgggagtcgggtctaagggagtc
atccccatgggggccaaggacctggaggaggctctggagatgggggtggactggtctctg
agggaaggctacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgccccagctgggg
actctgggagcgggaaaccactacgctgagatccaggtggtggacgagatctacaacgac
tatgccgccaagaagatgggcatcgaccacaaaggccaggtgtgtgtgatgatccacagt
ggcagcagaggcctgggacaccaggtggccacagatgctcttgttgccatggagaaggcg
atgaagagggataagatcatagtgaacgaccgtcagctggcgtgcgcccgcattacctcg
caggagggtcaggactacctgaaggggatggctgccgccggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggcgttctctgaggtcttcagcaccacgccg
gacgacctggacatgcacatcatctacgacgtctcgcacaacatcgccaaggttgaagaa
cacatggtggacgggaaacagaagactctgctgattcaccgcaaaggatccacccgagct
ttccccccacaccaccccctcatccctgtagactaccagctcacaggtcagccggtgttg
atcggagggacgatgggaacctgcagttatgtcctaacggggacggagcaggggatgacg
gagacgttcggtaccacctgtcacggagcgggtcgcgctctctctcgagcgaagtcccgc
aggaacctggacttccaggacgttctggacaaactggccgaccagggcatcgccatccga
gtggcctcacccaaactggtcatggaggaggctcctgaatcgtacaaaaacgtgacggac
gtcgtcaacacgtgtcacgacgctgggatcagtaagaaggcgatcaaactgagacccatc
gctgtgattaaaggctga
DBGET
integrated database retrieval system
